Analysis of interatomic Contacts of Structural Units in PDB entry:
6B8D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6B8D entry

There is 1 chain in PDB entry 6B8D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 405
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 6B8D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 8Right-handed 310
Helix 2
AA2
A
19 21Right-handed 310
Helix 3
AA3
A
22 34Right-handed alpha
Helix 4
AA4
A
35 40Right-handed 310
Helix 5
AA5
A
97 106Right-handed alpha
Helix 6
AA6
A
120 133Right-handed alpha
Helix 7
AA7
A
150 163Right-handed alpha
Helix 8
AA8
A
175 179Right-handed 310
Helix 9
AA9
A
208 210Right-handed 310
Helix 10
AB1
A
211 228Right-handed alpha
Helix 11
AB2
A
230 239Right-handed alpha
Helix 12
AB3
A
244 258Right-handed alpha
Helix 13
AB4
A
274 286Right-handed alpha
Helix 14
AB5
A
288 292Right-handed 310
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There are 5 sheets in PDB entry 6B8D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 72first strand
Strand 2
A
82 87anti-parallel
Strand 3
A
10 17parallel
Strand 4
A
108 114parallel
Strand 5
A
137 142parallel
Strand 6
A
262 266parallel
Strand 7
A
166 168parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 173first strand
Strand 2
A
181 184anti-parallel
Strand 3
A
189 193anti-parallel
Strand 4
A
202 205anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
295 298first strand
Strand 2
A
304 307anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
354 357first strand
Strand 2
A
346 349anti-parallel
Strand 3
A
394 396anti-parallel
Strand 4
A
316 323anti-parallel
Strand 5
A
331 338anti-parallel
Strand 6
A
380 384anti-parallel
Strand 7
A
361 364anti-parallel
Strand 8
A
369 372anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
340 342first strand
Strand 2
A
374 376anti-parallel
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