Analysis of interatomic Contacts of Structural Units in PDB entry:
6B8J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6B8J entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 4 chains in PDB entry 6B8J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 37SER 215
A
 ILE 217ILE 384
C
 VAL 1VAL 1
C
 ARG 3ARG 4
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 6B8J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
96 101Right-handed alpha
Helix 2
AA2
A
139 149Right-handed alpha
Helix 3
AA3
A
154 175Right-handed alpha
Helix 4
AA4
A
183 185Right-handed 310
Helix 5
AA5
A
219 223Right-handed 310
Helix 6
AA6
A
224 229Right-handed alpha
Helix 7
AA7
A
236 253Right-handed alpha
Helix 8
AA8
A
261 274Right-handed alpha
Helix 9
AA9
A
279 285Right-handed alpha
Helix 10
AB1
A
300 305Right-handed alpha
Helix 11
AB2
A
310 319Right-handed alpha
Helix 12
AB3
A
324 328Right-handed 310
Helix 13
AB4
A
330 336Right-handed alpha
Helix 14
AB5
A
337 345Right-handed 310
Helix 15
AB6
A
370 372Right-handed 310
Helix 16
AB7
A
373 378Right-handed alpha
Helix 17
AB8
A
379 383Right-handed 310
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There are 3 sheets in PDB entry 6B8J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 43first strand
Strand 2
A
52 65anti-parallel
Strand 3
A
68 75anti-parallel
Strand 4
A
81 87anti-parallel
Strand 5
A
128 133anti-parallel
Strand 6
A
112 115anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 138first strand
Strand 2
A
187 190anti-parallel
Strand 3
A
195 198anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 178first strand
Strand 2
A
205 206anti-parallel
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