Analysis of interatomic Contacts of Structural Units in PDB entry:
6B8L

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6B8L entry

There are 8 chains in PDB entry 6B8L (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 332	LEU 553
B	GLN 3	ALA 147
C	HIS 330	LEU 553
D	GLN 3	ALA 147
E	GLN 332	LEU 553
F	GLN 3	ALA 147
G	HIS 330	ARG 554
H	ASP 2	ALA 147

There are 53 helices in PDB entry 6B8L. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	338	355	Right-handed alpha
Helix 2	AA2	A	356	357	Right-handed 310
Helix 3	AA3	A	358	362	Right-handed 310
Helix 4	AA4	A	363	527	Right-handed alpha
Helix 5	AA5	A	528	551	Right-handed alpha
Helix 6	AA6	B	5	20	Right-handed alpha
Helix 7	AA7	B	28	39	Right-handed alpha
Helix 8	AA8	B	44	54	Right-handed alpha
Helix 9	AA9	B	65	75	Right-handed alpha
Helix 10	AB1	B	78	92	Right-handed alpha
Helix 11	AB2	B	102	112	Right-handed alpha
Helix 12	AB3	B	117	128	Right-handed alpha
Helix 13	AB4	B	138	146	Right-handed alpha
Helix 14	AB5	C	331	335	Right-handed alpha
Helix 15	AB6	C	338	355	Right-handed alpha
Helix 16	AB7	C	356	357	Right-handed 310
Helix 17	AB8	C	358	362	Right-handed 310
Helix 18	AB9	C	363	527	Right-handed alpha
Helix 19	AC1	C	528	552	Right-handed alpha
Helix 20	AC2	D	7	20	Right-handed alpha
Helix 21	AC3	D	28	39	Right-handed alpha
Helix 22	AC4	D	44	56	Right-handed alpha
Helix 23	AC5	D	65	75	Right-handed alpha
Helix 24	AC6	D	78	91	Right-handed alpha
Helix 25	AC7	D	102	112	Right-handed alpha
Helix 26	AC8	D	117	129	Right-handed alpha
Helix 27	AC9	D	138	146	Right-handed alpha
Helix 28	AD1	E	334	354	Right-handed alpha
Helix 29	AD2	E	358	362	Right-handed 310
Helix 30	AD3	E	363	527	Right-handed alpha
Helix 31	AD4	E	528	551	Right-handed alpha
Helix 32	AD5	F	5	20	Right-handed alpha
Helix 33	AD6	F	28	39	Right-handed alpha
Helix 34	AD7	F	44	54	Right-handed alpha
Helix 35	AD8	F	64	75	Right-handed alpha
Helix 36	AD9	F	78	92	Right-handed alpha
Helix 37	AE1	F	102	112	Right-handed alpha
Helix 38	AE2	F	117	128	Right-handed alpha
Helix 39	AE3	F	138	146	Right-handed alpha
Helix 40	AE4	G	334	355	Right-handed alpha
Helix 41	AE5	G	356	357	Right-handed 310
Helix 42	AE6	G	358	362	Right-handed 310
Helix 43	AE7	G	363	527	Right-handed alpha
Helix 44	AE8	G	528	551	Right-handed alpha
Helix 45	AE9	G	552	554	Right-handed 310
Helix 46	AF1	H	5	20	Right-handed alpha
Helix 47	AF2	H	28	39	Right-handed alpha
Helix 48	AF3	H	44	54	Right-handed alpha
Helix 49	AF4	H	65	75	Right-handed alpha
Helix 50	AF5	H	78	92	Right-handed alpha
Helix 51	AF6	H	102	112	Right-handed alpha
Helix 52	AF7	H	117	128	Right-handed alpha
Helix 53	AF8	H	138	146	Right-handed alpha

There are 7 sheets in PDB entry 6B8L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	26	27	first strand
Strand 2	B	63	64	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	99	101	first strand
Strand 2	B	135	137	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	26	27	first strand
Strand 2	D	63	64	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	99	101	first strand
Strand 2	D	135	137	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	99	101	first strand
Strand 2	F	135	137	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	26	27	first strand
Strand 2	H	63	64	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	99	101	first strand
Strand 2	H	135	137	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6B8L

Analysis of interatomic Contacts of Structural Units in PDB entry:
6B8L