Analysis of interatomic Contacts of Structural Units in PDB entry:
6B8Q

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6B8Q entry

There are 8 chains in PDB entry 6B8Q (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 365	LEU 541
B	ASP 2	ALA 147
C	ARG 366	THR 540
D	THR 5	ALA 147
E	ARG 367	LEU 541
F	LEU 4	ALA 147
G	LYS 361	LEU 541
H	ASP 2	ALA 147

There are 42 helices in PDB entry 6B8Q. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	366	383	Right-handed alpha
Helix 2	AA2	A	515	539	Right-handed alpha
Helix 3	AA3	B	5	20	Right-handed alpha
Helix 4	AA4	B	28	38	Right-handed alpha
Helix 5	AA5	B	44	54	Right-handed alpha
Helix 6	AA6	B	65	75	Right-handed alpha
Helix 7	AA7	B	78	91	Right-handed alpha
Helix 8	AA8	B	102	110	Right-handed alpha
Helix 9	AA9	B	117	129	Right-handed alpha
Helix 10	AB1	B	138	147	Right-handed alpha
Helix 11	AB2	C	367	383	Right-handed alpha
Helix 12	AB3	C	390	394	Right-handed 310
Helix 13	AB4	C	517	539	Right-handed alpha
Helix 14	AB5	D	8	20	Right-handed alpha
Helix 15	AB6	D	28	39	Right-handed alpha
Helix 16	AB7	D	44	54	Right-handed alpha
Helix 17	AB8	D	65	75	Right-handed alpha
Helix 18	AB9	D	78	92	Right-handed alpha
Helix 19	AC1	D	102	112	Right-handed alpha
Helix 20	AC2	D	117	129	Right-handed alpha
Helix 21	AC3	D	137	146	Right-handed alpha
Helix 22	AC4	E	368	383	Right-handed alpha
Helix 23	AC5	E	390	394	Right-handed 310
Helix 24	AC6	E	517	539	Right-handed alpha
Helix 25	AC7	F	5	20	Right-handed alpha
Helix 26	AC8	F	28	39	Right-handed alpha
Helix 27	AC9	F	44	54	Right-handed alpha
Helix 28	AD1	F	65	75	Right-handed alpha
Helix 29	AD2	F	78	92	Right-handed alpha
Helix 30	AD3	F	102	112	Right-handed alpha
Helix 31	AD4	F	117	129	Right-handed alpha
Helix 32	AD5	F	138	145	Right-handed alpha
Helix 33	AD6	G	362	383	Right-handed alpha
Helix 34	AD7	G	515	539	Right-handed alpha
Helix 35	AD8	H	5	20	Right-handed alpha
Helix 36	AD9	H	28	39	Right-handed alpha
Helix 37	AE1	H	44	56	Right-handed alpha
Helix 38	AE2	H	65	75	Right-handed alpha
Helix 39	AE3	H	78	91	Right-handed alpha
Helix 40	AE4	H	102	112	Right-handed alpha
Helix 41	AE5	H	117	129	Right-handed alpha
Helix 42	AE6	H	138	147	Right-handed alpha

There are 7 sheets in PDB entry 6B8Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	26	27	first strand
Strand 2	B	63	64	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	99	101	first strand
Strand 2	B	135	137	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	26	27	first strand
Strand 2	D	63	64	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	100	101	first strand
Strand 2	D	135	136	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	99	101	first strand
Strand 2	F	135	137	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	26	27	first strand
Strand 2	H	63	64	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	99	101	first strand
Strand 2	H	135	137	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6B8Q

Analysis of interatomic Contacts of Structural Units in PDB entry:
6B8Q