Analysis of interatomic Contacts of Structural Units in PDB entry:
6B8S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6B8S entry

There are 2 chains in PDB entry 6B8S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 2ALA 348
B
 LEU 2ALA 348
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 32 helices in PDB entry 6B8S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 13Right-handed alpha
Helix 2
AA2
A
14 31Right-handed alpha
Helix 3
AA3
A
32 44Right-handed alpha
Helix 4
AA4
A
47 51Right-handed 310
Helix 5
AA5
A
75 82Right-handed alpha
Helix 6
AA6
A
124 136Right-handed alpha
Helix 7
AA7
A
157 168Right-handed alpha
Helix 8
AA8
A
193 205Right-handed alpha
Helix 9
AA9
A
220 234Right-handed alpha
Helix 10
AB1
A
254 258Right-handed 310
Helix 11
AB2
A
265 281Right-handed alpha
Helix 12
AB3
A
282 284Right-handed 310
Helix 13
AB4
A
294 305Right-handed alpha
Helix 14
AB5
A
312 319Right-handed alpha
Helix 15
AB6
A
321 336Right-handed alpha
Helix 16
AB7
A
341 346Right-handed alpha
Helix 17
AB8
B
3 12Right-handed alpha
Helix 18
AB9
B
14 31Right-handed alpha
Helix 19
AC1
B
32 44Right-handed alpha
Helix 20
AC2
B
47 51Right-handed 310
Helix 21
AC3
B
75 82Right-handed alpha
Helix 22
AC4
B
123 135Right-handed alpha
Helix 23
AC5
B
153 155Right-handed 310
Helix 24
AC6
B
156 168Right-handed alpha
Helix 25
AC7
B
192 205Right-handed alpha
Helix 26
AC8
B
220 235Right-handed alpha
Helix 27
AC9
B
254 258Right-handed 310
Helix 28
AD1
B
265 281Right-handed alpha
Helix 29
AD2
B
294 305Right-handed alpha
Helix 30
AD3
B
312 319Right-handed alpha
Helix 31
AD4
B
321 338Right-handed alpha
Helix 32
AD5
B
341 346Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 6B8S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 54first strand
Strand 2
A
57 59anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 65first strand
Strand 2
A
86 92parallel
Strand 3
A
142 146parallel
Strand 4
A
174 178parallel
Strand 5
A
211 215parallel
Strand 6
A
238 241parallel
Strand 7
A
285 289parallel
Strand 8
A
308 311parallel
Strand 9
A
63 65parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 108first strand
Strand 2
A
113 116anti-parallel
Strand 3
A
259 262anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 54first strand
Strand 2
B
57 59anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
63 65first strand
Strand 2
B
86 92parallel
Strand 3
B
142 146parallel
Strand 4
B
174 178parallel
Strand 5
B
211 215parallel
Strand 6
B
238 241parallel
Strand 7
B
285 289parallel
Strand 8
B
308 311parallel
Strand 9
B
63 65parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
105 108first strand
Strand 2
B
113 116anti-parallel
Strand 3
B
259 262anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il