Analysis of interatomic Contacts of Structural Units in PDB entry:
6B9E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6B9E entry

There are 2 chains in PDB entry 6B9E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 29LYS 439
B
 VAL 29LYS 439
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 30 helices in PDB entry 6B9E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
49 58Right-handed alpha
Helix 2
AA2
A
79 93Right-handed alpha
Helix 3
AA3
A
158 171Right-handed alpha
Helix 4
AA4
A
183 189Right-handed alpha
Helix 5
AA5
A
190 201Right-handed alpha
Helix 6
AA6
A
228 241Right-handed alpha
Helix 7
AA7
A
247 260Right-handed alpha
Helix 8
AA8
A
273 279Right-handed alpha
Helix 9
AA9
A
285 289Right-handed 310
Helix 10
AB1
A
290 306Right-handed alpha
Helix 11
AB2
A
307 310Right-handed 310
Helix 12
AB3
A
321 336Right-handed alpha
Helix 13
AB4
A
343 376Right-handed alpha
Helix 14
AB5
A
383 405Right-handed alpha
Helix 15
AB6
A
410 437Right-handed alpha
Helix 16
AB7
B
49 58Right-handed alpha
Helix 17
AB8
B
79 93Right-handed alpha
Helix 18
AB9
B
158 171Right-handed alpha
Helix 19
AC1
B
183 192Right-handed alpha
Helix 20
AC2
B
193 205Right-handed alpha
Helix 21
AC3
B
228 247Right-handed alpha
Helix 22
AC4
B
248 251Right-handed 310
Helix 23
AC5
B
252 260Right-handed alpha
Helix 24
AC6
B
285 289Right-handed 310
Helix 25
AC7
B
290 306Right-handed alpha
Helix 26
AC8
B
307 310Right-handed 310
Helix 27
AC9
B
321 336Right-handed alpha
Helix 28
AD1
B
343 375Right-handed alpha
Helix 29
AD2
B
383 405Right-handed alpha
Helix 30
AD3
B
410 437Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 6B9E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 38first strand
Strand 2
A
122 126anti-parallel
Strand 3
A
139 148anti-parallel
Strand 4
A
130 133anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 38first strand
Strand 2
A
122 126anti-parallel
Strand 3
A
139 148anti-parallel
Strand 4
A
67 74parallel
Strand 5
A
173 179parallel
Strand 6
A
209 217parallel
Strand 7
A
261 268parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
314 315first strand
Strand 2
A
318 319anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 48first strand
Strand 2
B
34 40anti-parallel
Strand 3
B
122 126anti-parallel
Strand 4
B
139 148anti-parallel
Strand 5
B
130 133anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 48first strand
Strand 2
B
34 40anti-parallel
Strand 3
B
122 126anti-parallel
Strand 4
B
139 148anti-parallel
Strand 5
B
67 73parallel
Strand 6
B
173 179parallel
Strand 7
B
209 217parallel
Strand 8
B
261 268parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
314 315first strand
Strand 2
B
318 319anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il