Analysis of interatomic Contacts of Structural Units in PDB entry:
6B9J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6B9J entry

There are 6 chains in PDB entry 6B9J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
X	PRO 2	HIS 236
H	GLU 1	PRO 217
L	ILE 2	GLU 215
Y	PRO 2	HIS 236
A	GLU 1	PRO 217
B	ILE 2	GLU 215

There are 22 helices in PDB entry 6B9J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	X	103	108	Right-handed alpha
Helix 2	AA2	X	130	138	Right-handed alpha
Helix 3	AA3	X	155	160	Right-handed 310
Helix 4	AA4	X	193	200	Right-handed alpha
Helix 5	AA5	H	28	32	Right-handed 310
Helix 6	AA6	H	87	91	Right-handed 310
Helix 7	AA7	H	191	193	Right-handed 310
Helix 8	AA8	H	205	208	Right-handed 310
Helix 9	AA9	L	29	32	Right-handed 310
Helix 10	AB1	L	123	130	Right-handed alpha
Helix 11	AB2	L	185	189	Right-handed alpha
Helix 12	AB3	Y	103	108	Right-handed alpha
Helix 13	AB4	Y	131	138	Right-handed alpha
Helix 14	AB5	Y	155	160	Right-handed 310
Helix 15	AB6	Y	193	200	Right-handed alpha
Helix 16	AB7	A	28	32	Right-handed 310
Helix 17	AB8	A	87	91	Right-handed 310
Helix 18	AB9	A	191	193	Right-handed 310
Helix 19	AC1	A	205	208	Right-handed 310
Helix 20	AC2	B	29	32	Right-handed 310
Helix 21	AC3	B	123	130	Right-handed alpha
Helix 22	AC4	B	185	189	Right-handed alpha

There are 24 sheets in PDB entry 6B9J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	9	10	first strand
Strand 2	X	81	82	parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	16	17	first strand
Strand 2	X	232	234	parallel
Strand 3	X	166	172	anti-parallel
Strand 4	X	179	192	anti-parallel
Strand 5	X	114	124	parallel
Strand 6	X	89	96	anti-parallel
Strand 7	X	61	70	anti-parallel
Strand 8	X	51	54	anti-parallel
Strand 9	X	24	27	anti-parallel

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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	16	17	first strand
Strand 2	X	232	234	parallel
Strand 3	X	166	172	anti-parallel
Strand 4	X	179	192	anti-parallel
Strand 5	X	114	124	parallel
Strand 6	X	89	96	anti-parallel
Strand 7	X	61	70	anti-parallel
Strand 8	X	43	48	anti-parallel
Strand 9	X	32	38	anti-parallel
Strand 10	X	146	149	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	112	115	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	45	52	anti-parallel
Strand 6	H	57	60	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	112	115	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	104	107	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	124	128	first strand
Strand 2	H	139	149	anti-parallel
Strand 3	H	180	189	anti-parallel
Strand 4	H	167	169	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	155	158	first strand
Strand 2	H	199	204	anti-parallel
Strand 3	H	209	214	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	71	76	anti-parallel
Strand 4	L	63	68	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	46	49	first strand
Strand 2	L	34	39	anti-parallel
Strand 3	L	86	91	anti-parallel
Strand 4	L	104	105	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	116	120	first strand
Strand 2	L	131	141	anti-parallel
Strand 3	L	175	184	anti-parallel
Strand 4	L	161	165	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	155	156	first strand
Strand 2	L	147	152	anti-parallel
Strand 3	L	193	199	anti-parallel
Strand 4	L	207	212	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	9	10	first strand
Strand 2	Y	81	82	parallel

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There are 9 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	16	17	first strand
Strand 2	Y	232	234	parallel
Strand 3	Y	166	172	anti-parallel
Strand 4	Y	179	192	anti-parallel
Strand 5	Y	114	124	parallel
Strand 6	Y	89	96	anti-parallel
Strand 7	Y	61	70	anti-parallel
Strand 8	Y	51	54	anti-parallel
Strand 9	Y	24	27	anti-parallel

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There are 10 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	16	17	first strand
Strand 2	Y	232	234	parallel
Strand 3	Y	166	172	anti-parallel
Strand 4	Y	179	192	anti-parallel
Strand 5	Y	114	124	parallel
Strand 6	Y	89	96	anti-parallel
Strand 7	Y	61	70	anti-parallel
Strand 8	Y	43	48	anti-parallel
Strand 9	Y	32	38	anti-parallel
Strand 10	Y	146	149	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	6	first strand
Strand 2	A	18	25	anti-parallel
Strand 3	A	78	83	anti-parallel
Strand 4	A	68	73	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	12	first strand
Strand 2	A	112	115	parallel
Strand 3	A	92	99	anti-parallel
Strand 4	A	34	39	anti-parallel
Strand 5	A	45	52	anti-parallel
Strand 6	A	57	60	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	12	first strand
Strand 2	A	112	115	parallel
Strand 3	A	92	99	anti-parallel
Strand 4	A	104	107	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	124	128	first strand
Strand 2	A	139	149	anti-parallel
Strand 3	A	180	189	anti-parallel
Strand 4	A	167	169	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	155	158	first strand
Strand 2	A	199	204	anti-parallel
Strand 3	A	209	214	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	7	first strand
Strand 2	B	19	25	anti-parallel
Strand 3	B	71	76	anti-parallel
Strand 4	B	63	67	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	13	first strand
Strand 2	B	104	108	parallel
Strand 3	B	86	91	anti-parallel
Strand 4	B	34	39	anti-parallel
Strand 5	B	46	50	anti-parallel
Strand 6	B	54	55	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	120	first strand
Strand 2	B	131	141	anti-parallel
Strand 3	B	175	184	anti-parallel
Strand 4	B	161	165	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	155	157	first strand
Strand 2	B	147	152	anti-parallel
Strand 3	B	193	199	anti-parallel
Strand 4	B	207	212	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6B9J

Analysis of interatomic Contacts of Structural Units in PDB entry:
6B9J