Analysis of interatomic Contacts of Structural Units in PDB entry:
6B9M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6B9M entry

There are 4 chains in PDB entry 6B9M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 128PRO 277
B
 SER 128PRO 277
C
 LEU 129GLY 278
D
 LYS 648ARG 664
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 6B9M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
183 187Right-handed 310
Helix 2
AA2
A
192 194Right-handed 310
Helix 3
AA3
A
205 209Right-handed 310
Helix 4
AA4
B
183 186Right-handed 310
Helix 5
AA5
B
192 194Right-handed 310
Helix 6
AA6
B
205 209Right-handed 310
Helix 7
AA7
C
183 186Right-handed 310
Helix 8
AA8
C
205 209Right-handed 310
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There are 6 sheets in PDB entry 6B9M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 191first strand
Strand 2
A
173 180anti-parallel
Strand 3
A
153 164anti-parallel
Strand 4
A
142 146anti-parallel
Strand 5
A
196 198anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 219first strand
Strand 2
A
229 240anti-parallel
Strand 3
A
245 251anti-parallel
Strand 4
A
260 265anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
188 191first strand
Strand 2
B
173 180anti-parallel
Strand 3
B
153 164anti-parallel
Strand 4
B
142 146anti-parallel
Strand 5
B
196 198anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
214 219first strand
Strand 2
B
229 241anti-parallel
Strand 3
B
244 252anti-parallel
Strand 4
B
260 265anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
188 192first strand
Strand 2
C
174 180anti-parallel
Strand 3
C
153 163anti-parallel
Strand 4
C
142 146anti-parallel
Strand 5
C
196 198anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
214 219first strand
Strand 2
C
229 240anti-parallel
Strand 3
C
245 252anti-parallel
Strand 4
C
259 265anti-parallel
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