Analysis of interatomic Contacts of Structural Units in PDB entry:
6B9R

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6B9R entry

There are 3 chains in PDB entry 6B9R (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 9	TYR 450
B	SER 9	TYR 450
C	ASP 5	ALA 423

There are 63 helices in PDB entry 6B9R. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	28	Right-handed alpha
Helix 2	AA2	A	31	40	Right-handed alpha
Helix 3	AA3	A	45	52	Right-handed alpha
Helix 4	AA4	A	57	68	Right-handed alpha
Helix 5	AA5	A	71	76	Right-handed 310
Helix 6	AA6	A	90	97	Right-handed alpha
Helix 7	AA7	A	209	213	Right-handed 310
Helix 8	AA8	A	214	224	Right-handed alpha
Helix 9	AA9	A	224	232	Right-handed alpha
Helix 10	AB1	A	237	250	Right-handed alpha
Helix 11	AB2	A	252	261	Right-handed alpha
Helix 12	AB3	A	263	272	Right-handed alpha
Helix 13	AB4	A	278	289	Right-handed alpha
Helix 14	AB5	A	292	297	Right-handed 310
Helix 15	AB6	A	424	434	Right-handed alpha
Helix 16	AB7	A	437	444	Right-handed alpha
Helix 17	AB8	B	10	28	Right-handed alpha
Helix 18	AB9	B	31	40	Right-handed alpha
Helix 19	AC1	B	45	51	Right-handed alpha
Helix 20	AC2	B	57	68	Right-handed alpha
Helix 21	AC3	B	71	76	Right-handed 310
Helix 22	AC4	B	90	97	Right-handed alpha
Helix 23	AC5	B	214	224	Right-handed alpha
Helix 24	AC6	B	224	231	Right-handed alpha
Helix 25	AC7	B	237	250	Right-handed alpha
Helix 26	AC8	B	252	261	Right-handed alpha
Helix 27	AC9	B	263	272	Right-handed alpha
Helix 28	AD1	B	278	289	Right-handed alpha
Helix 29	AD2	B	292	297	Right-handed 310
Helix 30	AD3	B	303	307	Right-handed 310
Helix 31	AD4	B	424	433	Right-handed alpha
Helix 32	AD5	B	437	444	Right-handed alpha
Helix 33	AD6	C	6	28	Right-handed alpha
Helix 34	AD7	C	31	40	Right-handed alpha
Helix 35	AD8	C	44	52	Right-handed alpha
Helix 36	AD9	C	57	68	Right-handed alpha
Helix 37	AE1	C	71	76	Right-handed 310
Helix 38	AE2	C	90	97	Right-handed alpha
Helix 39	AE3	C	214	224	Right-handed alpha
Helix 40	AE4	C	224	231	Right-handed alpha
Helix 41	AE5	C	237	250	Right-handed alpha
Helix 42	AE6	C	252	261	Right-handed alpha
Helix 43	AE7	C	263	271	Right-handed alpha
Helix 44	AE8	C	278	290	Right-handed alpha
Helix 45	AE9	C	292	297	Right-handed 310
Helix 46	AF1	C	424	434	Right-handed alpha
Helix 47	AF2	C	437	444	Right-handed alpha
Helix 48	AF3	D	10	28	Right-handed alpha
Helix 49	AF4	D	31	40	Right-handed alpha
Helix 50	AF5	D	44	52	Right-handed alpha
Helix 51	AF6	D	57	68	Right-handed alpha
Helix 52	AF7	D	71	76	Right-handed 310
Helix 53	AF8	D	90	97	Right-handed alpha
Helix 54	AF9	D	214	224	Right-handed alpha
Helix 55	AG1	D	224	231	Right-handed alpha
Helix 56	AG2	D	237	250	Right-handed alpha
Helix 57	AG3	D	252	261	Right-handed alpha
Helix 58	AG4	D	263	271	Right-handed alpha
Helix 59	AG5	D	278	289	Right-handed alpha
Helix 60	AG6	D	292	297	Right-handed 310
Helix 61	AG7	D	311	315	Right-handed 310
Helix 62	AG8	D	424	434	Right-handed alpha
Helix 63	AG9	D	438	444	Right-handed alpha

There are 16 sheets in PDB entry 6B9R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	86	89	first strand
Strand 2	A	395	398	anti-parallel
Strand 3	A	364	369	anti-parallel
Strand 4	A	412	419	anti-parallel
Strand 5	A	343	349	anti-parallel
Strand 6	A	328	332	anti-parallel
Strand 7	A	317	320	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	103	first strand
Strand 2	A	106	113	anti-parallel
Strand 3	A	123	129	anti-parallel
Strand 4	A	202	208	anti-parallel
Strand 5	A	152	158	anti-parallel
Strand 6	A	181	184	anti-parallel
Strand 7	A	307	310	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	170	175	first strand
Strand 2	A	161	167	anti-parallel
Strand 3	A	190	194	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	384	390	first strand
Strand 2	A	375	381	anti-parallel
Strand 3	A	403	407	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	86	89	first strand
Strand 2	B	395	398	anti-parallel
Strand 3	B	364	369	anti-parallel
Strand 4	B	412	419	anti-parallel
Strand 5	B	343	349	anti-parallel
Strand 6	B	328	332	anti-parallel
Strand 7	B	317	320	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	99	103	first strand
Strand 2	B	106	113	anti-parallel
Strand 3	B	123	129	anti-parallel
Strand 4	B	202	208	anti-parallel
Strand 5	B	152	158	anti-parallel
Strand 6	B	181	184	anti-parallel
Strand 7	B	309	310	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	170	175	first strand
Strand 2	B	161	167	anti-parallel
Strand 3	B	190	194	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	384	390	first strand
Strand 2	B	375	381	anti-parallel
Strand 3	B	403	407	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	86	89	first strand
Strand 2	C	395	398	anti-parallel
Strand 3	C	364	369	anti-parallel
Strand 4	C	412	419	anti-parallel
Strand 5	C	343	349	anti-parallel
Strand 6	C	328	332	anti-parallel
Strand 7	C	317	320	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	99	103	first strand
Strand 2	C	106	113	anti-parallel
Strand 3	C	123	129	anti-parallel
Strand 4	C	202	207	anti-parallel
Strand 5	C	153	158	anti-parallel
Strand 6	C	181	184	anti-parallel
Strand 7	C	307	310	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	170	175	first strand
Strand 2	C	161	167	anti-parallel
Strand 3	C	190	194	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	384	390	first strand
Strand 2	C	375	381	anti-parallel
Strand 3	C	403	407	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	86	89	first strand
Strand 2	D	395	398	anti-parallel
Strand 3	D	364	369	anti-parallel
Strand 4	D	412	419	anti-parallel
Strand 5	D	343	349	anti-parallel
Strand 6	D	325	332	anti-parallel
Strand 7	D	317	322	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	99	103	first strand
Strand 2	D	106	113	anti-parallel
Strand 3	D	123	129	anti-parallel
Strand 4	D	202	207	anti-parallel
Strand 5	D	153	158	anti-parallel
Strand 6	D	181	184	anti-parallel
Strand 7	D	307	310	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	170	175	first strand
Strand 2	D	161	167	anti-parallel
Strand 3	D	190	194	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	384	390	first strand
Strand 2	D	375	381	anti-parallel
Strand 3	D	404	407	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6B9R

Analysis of interatomic Contacts of Structural Units in PDB entry:
6B9R