Analysis of interatomic Contacts of Structural Units in PDB entry:
6B9V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6B9V entry

There are 2 chains in PDB entry 6B9V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 264
B
 ARG 4GLU 265
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 6B9V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
32 36Right-handed 310
Helix 2
AA2
A
58 67Right-handed alpha
Helix 3
AA3
A
80 85Right-handed alpha
Helix 4
AA4
A
86 91Right-handed alpha
Helix 5
AA5
A
92 94Right-handed 310
Helix 6
AA6
A
95 100Right-handed alpha
Helix 7
AA7
A
109 120Right-handed alpha
Helix 8
AA8
A
183 188Right-handed alpha
Helix 9
AA9
A
211 223Right-handed alpha
Helix 10
AB1
A
237 245Right-handed alpha
Helix 11
AB2
B
26 30Right-handed 310
Helix 12
AB3
B
32 36Right-handed 310
Helix 13
AB4
B
58 67Right-handed alpha
Helix 14
AB5
B
80 85Right-handed alpha
Helix 15
AB6
B
86 91Right-handed alpha
Helix 16
AB7
B
92 94Right-handed 310
Helix 17
AB8
B
95 100Right-handed alpha
Helix 18
AB9
B
109 121Right-handed alpha
Helix 19
AC1
B
183 188Right-handed alpha
Helix 20
AC2
B
211 223Right-handed alpha
Helix 21
AC3
B
237 243Right-handed alpha
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There are 4 sheets in PDB entry 6B9V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
136 140first strand
Strand 2
A
104 108parallel
Strand 3
A
73 75parallel
Strand 4
A
49 53parallel
Strand 5
A
41 46anti-parallel
Strand 6
A
2 11anti-parallel
Strand 7
A
257 263anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 148first strand
Strand 2
A
151 160anti-parallel
Strand 3
A
163 170anti-parallel
Strand 4
A
173 176anti-parallel
Strand 5
A
195 199parallel
Strand 6
A
226 230parallel
Strand 7
A
249 251parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
136 140first strand
Strand 2
B
104 108parallel
Strand 3
B
73 75parallel
Strand 4
B
49 53parallel
Strand 5
B
41 46anti-parallel
Strand 6
B
5 11anti-parallel
Strand 7
B
257 260anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
146 148first strand
Strand 2
B
151 160anti-parallel
Strand 3
B
163 170anti-parallel
Strand 4
B
173 176anti-parallel
Strand 5
B
195 199parallel
Strand 6
B
226 230parallel
Strand 7
B
249 251parallel
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