Analysis of interatomic Contacts of Structural Units in PDB entry:
6BAB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6BAB entry

There are 4 chains in PDB entry 6BAB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 12	LEU 301
B	GLU 14	LYS 302
C	GLU 14	LEU 301
D	ARG 11	LEU 302

There are 61 helices in PDB entry 6BAB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	54	69	Right-handed alpha
Helix 2	AA2	A	98	104	Right-handed alpha
Helix 3	AA3	A	110	131	Right-handed alpha
Helix 4	AA4	A	139	141	Right-handed 310
Helix 5	AA5	A	147	151	Right-handed 310
Helix 6	AA6	A	178	182	Right-handed 310
Helix 7	AA7	A	183	188	Right-handed alpha
Helix 8	AA8	A	194	211	Right-handed alpha
Helix 9	AA9	A	219	230	Right-handed alpha
Helix 10	AB1	A	237	242	Right-handed 310
Helix 11	AB2	A	243	254	Right-handed alpha
Helix 12	AB3	A	263	268	Right-handed alpha
Helix 13	AB4	A	270	275	Right-handed alpha
Helix 14	AB5	A	275	280	Right-handed alpha
Helix 15	AB6	A	285	301	Right-handed alpha
Helix 16	AB7	B	49	51	Right-handed 310
Helix 17	AB8	B	52	69	Right-handed alpha
Helix 18	AB9	B	99	104	Right-handed alpha
Helix 19	AC1	B	110	131	Right-handed alpha
Helix 20	AC2	B	139	141	Right-handed 310
Helix 21	AC3	B	178	182	Right-handed 310
Helix 22	AC4	B	183	188	Right-handed alpha
Helix 23	AC5	B	194	211	Right-handed alpha
Helix 24	AC6	B	219	230	Right-handed alpha
Helix 25	AC7	B	237	242	Right-handed 310
Helix 26	AC8	B	243	254	Right-handed alpha
Helix 27	AC9	B	263	268	Right-handed alpha
Helix 28	AD1	B	270	275	Right-handed alpha
Helix 29	AD2	B	275	280	Right-handed alpha
Helix 30	AD3	B	285	298	Right-handed alpha
Helix 31	AD4	C	54	69	Right-handed alpha
Helix 32	AD5	C	98	105	Right-handed alpha
Helix 33	AD6	C	110	131	Right-handed alpha
Helix 34	AD7	C	139	141	Right-handed 310
Helix 35	AD8	C	147	151	Right-handed 310
Helix 36	AD9	C	178	182	Right-handed 310
Helix 37	AE1	C	183	188	Right-handed alpha
Helix 38	AE2	C	194	211	Right-handed alpha
Helix 39	AE3	C	219	230	Right-handed alpha
Helix 40	AE4	C	237	242	Right-handed 310
Helix 41	AE5	C	243	254	Right-handed alpha
Helix 42	AE6	C	257	261	Right-handed 310
Helix 43	AE7	C	263	268	Right-handed alpha
Helix 44	AE8	C	270	275	Right-handed alpha
Helix 45	AE9	C	275	280	Right-handed alpha
Helix 46	AF1	C	285	300	Right-handed alpha
Helix 47	AF2	D	50	52	Right-handed 310
Helix 48	AF3	D	53	70	Right-handed alpha
Helix 49	AF4	D	99	105	Right-handed alpha
Helix 50	AF5	D	111	132	Right-handed alpha
Helix 51	AF6	D	140	142	Right-handed 310
Helix 52	AF7	D	179	183	Right-handed 310
Helix 53	AF8	D	184	189	Right-handed alpha
Helix 54	AF9	D	195	212	Right-handed alpha
Helix 55	AG1	D	220	231	Right-handed alpha
Helix 56	AG2	D	238	243	Right-handed 310
Helix 57	AG3	D	244	255	Right-handed alpha
Helix 58	AG4	D	264	269	Right-handed alpha
Helix 59	AG5	D	271	276	Right-handed alpha
Helix 60	AG6	D	276	281	Right-handed alpha
Helix 61	AG7	D	286	299	Right-handed alpha

There are 12 sheets in PDB entry 6BAB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	24	first strand
Strand 2	A	27	34	anti-parallel
Strand 3	A	39	47	anti-parallel
Strand 4	A	86	92	anti-parallel
Strand 5	A	77	82	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	133	134	first strand
Strand 2	A	163	164	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	143	145	first strand
Strand 2	A	154	156	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	22	first strand
Strand 2	B	28	34	anti-parallel
Strand 3	B	40	47	anti-parallel
Strand 4	B	86	92	anti-parallel
Strand 5	B	77	82	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	98	first strand
Strand 2	B	143	145	anti-parallel
Strand 3	B	154	156	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	133	134	first strand
Strand 2	B	163	164	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	16	24	first strand
Strand 2	C	27	33	anti-parallel
Strand 3	C	41	47	anti-parallel
Strand 4	C	86	92	anti-parallel
Strand 5	C	77	82	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	133	134	first strand
Strand 2	C	163	164	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	143	145	first strand
Strand 2	C	154	156	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	16	24	first strand
Strand 2	D	29	35	anti-parallel
Strand 3	D	41	48	anti-parallel
Strand 4	D	87	93	anti-parallel
Strand 5	D	78	83	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	134	135	first strand
Strand 2	D	164	165	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	144	146	first strand
Strand 2	D	155	157	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6BAB

Analysis of interatomic Contacts of Structural Units in PDB entry:
6BAB