Analysis of interatomic Contacts of Structural Units in PDB entry:
6BAJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6BAJ entry

There are 3 chains in PDB entry 6BAJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	MET 1	PHE 1033
C	MET 1	PHE 1033
A	MET 1	SER 1034

There are127 helices in PDB entry 6BAJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	1	7	Right-handed alpha
Helix 2	AA2	B	8	25	Right-handed alpha
Helix 3	AA3	B	53	59	Right-handed alpha
Helix 4	AA4	B	61	66	Right-handed alpha
Helix 5	AA5	B	99	113	Right-handed alpha
Helix 6	AA6	B	119	126	Right-handed alpha
Helix 7	AA7	B	150	162	Right-handed alpha
Helix 8	AA8	B	162	167	Right-handed alpha
Helix 9	AA9	B	189	196	Right-handed alpha
Helix 10	AB1	B	199	207	Right-handed alpha
Helix 11	AB2	B	242	248	Right-handed alpha
Helix 12	AB3	B	261	265	Right-handed alpha
Helix 13	AB4	B	298	312	Right-handed alpha
Helix 14	AB5	B	313	317	Right-handed 310
Helix 15	AB6	B	329	360	Right-handed alpha
Helix 16	AB7	B	366	372	Right-handed alpha
Helix 17	AB8	B	372	387	Right-handed alpha
Helix 18	AB9	B	394	399	Right-handed alpha
Helix 19	AC1	B	401	423	Right-handed alpha
Helix 20	AC2	B	426	438	Right-handed alpha
Helix 21	AC3	B	438	450	Right-handed alpha
Helix 22	AC4	B	455	459	Right-handed 310
Helix 23	AC5	B	465	486	Right-handed alpha
Helix 24	AC6	B	487	496	Right-handed alpha
Helix 25	AC7	B	514	535	Right-handed alpha
Helix 26	AC8	B	538	558	Right-handed alpha
Helix 27	AC9	B	583	602	Right-handed alpha
Helix 28	AD1	B	633	637	Right-handed 310
Helix 29	AD2	B	643	655	Right-handed alpha
Helix 30	AD3	B	674	678	Right-handed 310
Helix 31	AD4	B	692	703	Right-handed alpha
Helix 32	AD5	B	732	739	Right-handed alpha
Helix 33	AD6	B	742	754	Right-handed alpha
Helix 34	AD7	B	782	788	Right-handed 310
Helix 35	AD8	B	840	848	Right-handed alpha
Helix 36	AD9	B	863	868	Right-handed alpha
Helix 37	AE1	B	873	892	Right-handed alpha
Helix 38	AE2	B	896	902	Right-handed alpha
Helix 39	AE3	B	906	920	Right-handed alpha
Helix 40	AE4	B	924	951	Right-handed alpha
Helix 41	AE5	B	960	970	Right-handed alpha
Helix 42	AE6	B	972	981	Right-handed alpha
Helix 43	AE7	B	986	992	Right-handed alpha
Helix 44	AE8	B	998	1017	Right-handed alpha
Helix 45	AE9	B	1018	1020	Right-handed 310
Helix 46	AF1	B	1021	1032	Right-handed alpha
Helix 47	AF2	C	8	25	Right-handed alpha
Helix 48	AF3	C	55	61	Right-handed alpha
Helix 49	AF4	C	62	68	Right-handed alpha
Helix 50	AF5	C	99	112	Right-handed alpha
Helix 51	AF6	C	113	118	Right-handed 310
Helix 52	AF7	C	150	161	Right-handed alpha
Helix 53	AF8	C	162	167	Right-handed alpha
Helix 54	AF9	C	199	210	Right-handed alpha
Helix 55	AG1	C	242	248	Right-handed alpha
Helix 56	AG2	C	298	311	Right-handed alpha
Helix 57	AG3	C	330	360	Right-handed alpha
Helix 58	AG4	C	366	369	Right-handed 310
Helix 59	AG5	C	370	386	Right-handed alpha
Helix 60	AG6	C	391	405	Right-handed alpha
Helix 61	AG7	C	406	424	Right-handed alpha
Helix 62	AG8	C	426	436	Right-handed alpha
Helix 63	AG9	C	438	449	Right-handed alpha
Helix 64	AH1	C	462	486	Right-handed alpha
Helix 65	AH2	C	487	496	Right-handed alpha
Helix 66	AH3	C	513	533	Right-handed alpha
Helix 67	AH4	C	539	558	Right-handed alpha
Helix 68	AH5	C	583	601	Right-handed alpha
Helix 69	AH6	C	633	637	Right-handed 310
Helix 70	AH7	C	643	655	Right-handed alpha
Helix 71	AH8	C	692	698	Right-handed alpha
Helix 72	AH9	C	698	706	Right-handed alpha
Helix 73	AI1	C	732	739	Right-handed alpha
Helix 74	AI2	C	746	755	Right-handed alpha
Helix 75	AI3	C	782	789	Right-handed 310
Helix 76	AI4	C	840	848	Right-handed alpha
Helix 77	AI5	C	861	872	Right-handed alpha
Helix 78	AI6	C	872	893	Right-handed alpha
Helix 79	AI7	C	897	901	Right-handed 310
Helix 80	AI8	C	904	919	Right-handed alpha
Helix 81	AI9	C	924	957	Right-handed alpha
Helix 82	AJ1	C	959	971	Right-handed alpha
Helix 83	AJ2	C	972	984	Right-handed alpha
Helix 84	AJ3	C	986	991	Right-handed alpha
Helix 85	AJ4	C	998	1017	Right-handed alpha
Helix 86	AJ5	C	1017	1022	Right-handed alpha
Helix 87	AJ6	C	1023	1028	Right-handed alpha
Helix 88	AJ7	C	1028	1033	Right-handed alpha
Helix 89	AJ8	A	8	28	Right-handed alpha
Helix 90	AJ9	A	53	61	Right-handed alpha
Helix 91	AK1	A	61	67	Right-handed alpha
Helix 92	AK2	A	99	113	Right-handed alpha
Helix 93	AK3	A	119	126	Right-handed alpha
Helix 94	AK4	A	150	162	Right-handed alpha
Helix 95	AK5	A	189	196	Right-handed alpha
Helix 96	AK6	A	199	211	Right-handed alpha
Helix 97	AK7	A	242	247	Right-handed alpha
Helix 98	AK8	A	302	311	Right-handed alpha
Helix 99	AK9	A	329	358	Right-handed alpha
Helix 100	AL1	A	362	364	Right-handed 310
Helix 101	AL2	A	365	387	Right-handed alpha
Helix 102	AL3	A	391	400	Right-handed alpha
Helix 103	AL4	A	405	423	Right-handed alpha
Helix 104	AL5	A	426	434	Right-handed alpha
Helix 105	AL6	A	435	438	Right-handed 310
Helix 106	AL7	A	440	451	Right-handed alpha
Helix 107	AL8	A	463	497	Right-handed alpha
Helix 108	AL9	A	544	557	Right-handed alpha
Helix 109	AM1	A	584	602	Right-handed alpha
Helix 110	AM2	A	633	637	Right-handed 310
Helix 111	AM3	A	643	654	Right-handed alpha
Helix 112	AM4	A	691	706	Right-handed alpha
Helix 113	AM5	A	732	740	Right-handed alpha
Helix 114	AM6	A	742	755	Right-handed alpha
Helix 115	AM7	A	777	780	Right-handed 310
Helix 116	AM8	A	782	788	Right-handed 310
Helix 117	AM9	A	861	865	Right-handed 310
Helix 118	AN1	A	872	893	Right-handed alpha
Helix 119	AN2	A	896	901	Right-handed 310
Helix 120	AN3	A	904	920	Right-handed alpha
Helix 121	AN4	A	931	936	Right-handed alpha
Helix 122	AN5	A	937	947	Right-handed alpha
Helix 123	AN6	A	947	956	Right-handed alpha
Helix 124	AN7	A	960	987	Right-handed alpha
Helix 125	AN8	A	988	990	Right-handed 310
Helix 126	AN9	A	996	1017	Right-handed alpha
Helix 127	AO1	A	1021	1033	Right-handed alpha

There are 25 sheets in PDB entry 6BAJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	131	first strand
Strand 2	B	42	48	anti-parallel
Strand 3	B	87	94	anti-parallel
Strand 4	B	75	83	anti-parallel
Strand 5	B	815	819	anti-parallel
Strand 6	B	822	827	anti-parallel
Strand 7	B	682	686	anti-parallel
Strand 8	B	855	859	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	280	281	first strand
Strand 2	B	284	288	anti-parallel
Strand 3	B	138	144	anti-parallel
Strand 4	B	321	328	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	266	267	first strand
Strand 2	B	182	188	anti-parallel
Strand 3	B	271	272	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	266	267	first strand
Strand 2	B	182	188	anti-parallel
Strand 3	B	767	775	parallel
Strand 4	B	761	764	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	218	219	first strand
Strand 2	B	232	235	anti-parallel
Strand 3	C	724	731	parallel
Strand 4	C	805	812	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	606	613	first strand
Strand 2	B	624	631	anti-parallel
Strand 3	B	571	577	anti-parallel
Strand 4	B	662	666	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	713	714	first strand
Strand 2	B	830	831	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	808	811	first strand
Strand 2	B	725	728	anti-parallel
Strand 3	A	234	235	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	790	792	first strand
Strand 2	B	798	800	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	131	first strand
Strand 2	C	42	48	anti-parallel
Strand 3	C	87	93	anti-parallel
Strand 4	C	77	83	anti-parallel
Strand 5	C	815	819	anti-parallel
Strand 6	C	823	824	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	176	177	first strand
Strand 2	C	284	291	anti-parallel
Strand 3	C	278	281	anti-parallel
Strand 4	C	610	613	anti-parallel
Strand 5	C	624	627	anti-parallel
Strand 6	C	571	577	anti-parallel
Strand 7	C	629	631	anti-parallel
Strand 8	C	606	608	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	321	328	first strand
Strand 2	C	138	144	anti-parallel
Strand 3	C	284	291	anti-parallel
Strand 4	C	278	281	anti-parallel
Strand 5	C	610	613	anti-parallel
Strand 6	C	624	627	anti-parallel
Strand 7	C	571	577	anti-parallel
Strand 8	C	662	667	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	266	272	first strand
Strand 2	C	182	188	anti-parallel
Strand 3	C	767	775	parallel
Strand 4	C	757	764	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	215	218	first strand
Strand 2	C	233	235	anti-parallel
Strand 3	A	724	731	parallel
Strand 4	A	805	812	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	681	682	first strand
Strand 2	C	827	831	anti-parallel
Strand 3	C	713	718	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	791	792	first strand
Strand 2	C	798	799	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	130	first strand
Strand 2	A	42	48	anti-parallel
Strand 3	A	87	94	anti-parallel
Strand 4	A	75	83	anti-parallel
Strand 5	A	815	819	anti-parallel
Strand 6	A	822	823	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	138	139	first strand
Strand 2	A	289	291	anti-parallel
Strand 3	A	175	177	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	141	143	first strand
Strand 2	A	322	324	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	266	272	first strand
Strand 2	A	182	188	anti-parallel
Strand 3	A	767	775	parallel
Strand 4	A	757	764	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	250	253	first strand
Strand 2	A	259	261	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	284	285	first strand
Strand 2	A	278	281	anti-parallel
Strand 3	A	611	613	anti-parallel
Strand 4	A	625	631	anti-parallel
Strand 5	A	606	608	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	284	285	first strand
Strand 2	A	278	281	anti-parallel
Strand 3	A	611	613	anti-parallel
Strand 4	A	625	631	anti-parallel
Strand 5	A	571	577	anti-parallel
Strand 6	A	662	666	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	717	718	first strand
Strand 2	A	827	828	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	790	792	first strand
Strand 2	A	798	800	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6BAJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6BAJ