Analysis of interatomic Contacts of Structural Units in PDB entry:
6BAP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6BAP entry

There are 3 chains in PDB entry 6BAP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 11	LEU 515
B	GLN 11	LEU 515
C	THR 16	LEU 515

There are 55 helices in PDB entry 6BAP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	51	57	Right-handed alpha
Helix 2	AA2	A	59	64	Right-handed alpha
Helix 3	AA3	A	67	72	Right-handed 310
Helix 4	AA4	A	73	85	Right-handed alpha
Helix 5	AA5	A	88	93	Right-handed 310
Helix 6	AA6	A	130	150	Right-handed alpha
Helix 7	AA7	A	153	170	Right-handed alpha
Helix 8	AA8	A	205	209	Right-handed 310
Helix 9	AA9	A	210	220	Right-handed alpha
Helix 10	AB1	A	256	267	Right-handed alpha
Helix 11	AB2	A	298	321	Right-handed alpha
Helix 12	AB3	A	326	342	Right-handed alpha
Helix 13	AB4	A	347	355	Right-handed alpha
Helix 14	AB5	A	355	363	Right-handed alpha
Helix 15	AB6	A	387	393	Right-handed alpha
Helix 16	AB7	A	408	413	Right-handed alpha
Helix 17	AB8	A	414	418	Right-handed 310
Helix 18	AB9	A	419	424	Right-handed alpha
Helix 19	AC1	A	490	514	Right-handed alpha
Helix 20	AC2	B	17	21	Right-handed 310
Helix 21	AC3	B	51	56	Right-handed alpha
Helix 22	AC4	B	59	64	Right-handed alpha
Helix 23	AC5	B	67	71	Right-handed 310
Helix 24	AC6	B	73	75	Right-handed 310
Helix 25	AC7	B	76	86	Right-handed alpha
Helix 26	AC8	B	89	93	Right-handed 310
Helix 27	AC9	B	133	151	Right-handed alpha
Helix 28	AD1	B	153	170	Right-handed alpha
Helix 29	AD2	B	205	209	Right-handed 310
Helix 30	AD3	B	210	220	Right-handed alpha
Helix 31	AD4	B	256	266	Right-handed alpha
Helix 32	AD5	B	298	316	Right-handed alpha
Helix 33	AD6	B	316	321	Right-handed alpha
Helix 34	AD7	B	328	345	Right-handed alpha
Helix 35	AD8	B	348	354	Right-handed alpha
Helix 36	AD9	B	355	363	Right-handed alpha
Helix 37	AE1	B	387	396	Right-handed alpha
Helix 38	AE2	B	408	413	Right-handed alpha
Helix 39	AE3	B	414	417	Right-handed 310
Helix 40	AE4	B	420	424	Right-handed 310
Helix 41	AE5	B	455	458	Right-handed 310
Helix 42	AE6	B	490	514	Right-handed alpha
Helix 43	AE7	C	51	57	Right-handed alpha
Helix 44	AE8	C	59	64	Right-handed alpha
Helix 45	AE9	C	67	72	Right-handed 310
Helix 46	AF1	C	76	86	Right-handed alpha
Helix 47	AF2	C	88	93	Right-handed 310
Helix 48	AF3	C	133	150	Right-handed alpha
Helix 49	AF4	C	155	170	Right-handed alpha
Helix 50	AF5	C	205	209	Right-handed 310
Helix 51	AF6	C	210	218	Right-handed alpha
Helix 52	AF7	C	256	267	Right-handed alpha
Helix 53	AF8	C	298	309	Right-handed alpha
Helix 54	AF9	C	311	316	Right-handed alpha
Helix 55	AG1	C	499	503	Right-handed 310

There are 13 sheets in PDB entry 6BAP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	29	first strand
Strand 2	A	233	237	anti-parallel
Strand 3	A	45	49	anti-parallel
Strand 4	A	34	38	anti-parallel
Strand 5	A	119	125	anti-parallel
Strand 6	A	104	114	anti-parallel
Strand 7	A	95	101	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	203	204	first strand
Strand 2	A	185	192	anti-parallel
Strand 3	A	173	179	anti-parallel
Strand 4	A	281	290	anti-parallel
Strand 5	A	270	278	anti-parallel
Strand 6	A	222	225	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	375	378	first strand
Strand 2	A	367	372	anti-parallel
Strand 3	A	438	443	anti-parallel
Strand 4	A	425	430	anti-parallel
Strand 5	A	404	406	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	449	453	first strand
Strand 2	A	477	481	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	29	first strand
Strand 2	B	233	237	anti-parallel
Strand 3	B	45	49	anti-parallel
Strand 4	B	34	38	anti-parallel
Strand 5	B	118	125	anti-parallel
Strand 6	B	104	115	anti-parallel
Strand 7	B	95	101	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	203	204	first strand
Strand 2	B	185	192	anti-parallel
Strand 3	B	173	179	anti-parallel
Strand 4	B	281	290	anti-parallel
Strand 5	B	270	278	anti-parallel
Strand 6	B	222	225	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	375	378	first strand
Strand 2	B	367	372	anti-parallel
Strand 3	B	438	442	anti-parallel
Strand 4	B	427	430	anti-parallel
Strand 5	B	404	405	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	449	453	first strand
Strand 2	B	477	481	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	460	462	first strand
Strand 2	B	469	471	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	29	first strand
Strand 2	C	233	237	anti-parallel
Strand 3	C	45	49	anti-parallel
Strand 4	C	34	38	anti-parallel
Strand 5	C	118	123	anti-parallel
Strand 6	C	111	115	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	96	98	first strand
Strand 2	C	107	109	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	175	178	first strand
Strand 2	C	284	290	anti-parallel
Strand 3	C	270	274	anti-parallel
Strand 4	C	222	225	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	277	278	first strand
Strand 2	C	281	282	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6BAP

Analysis of interatomic Contacts of Structural Units in PDB entry:
6BAP