Analysis of interatomic Contacts of Structural Units in PDB entry:
6BAQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6BAQ entry

There are 8 chains in PDB entry 6BAQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 65	LYS 277
B	THR 69	VAL 278
C	THR 69	LYS 277
D	PRO 68	LYS 277
E	LEU 64	LYS 277
F	LEU 64	LYS 277
G	PRO 65	LYS 277
H	PRO 68	LYS 277

There are 54 helices in PDB entry 6BAQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	67	70	Right-handed 310
Helix 2	AA2	A	71	87	Right-handed alpha
Helix 3	AA3	A	88	95	Right-handed alpha
Helix 4	AA4	A	97	104	Right-handed alpha
Helix 5	AA5	A	123	129	Right-handed alpha
Helix 6	AA6	A	168	172	Right-handed 310
Helix 7	AA7	A	226	255	Right-handed alpha
Helix 8	AA8	A	257	270	Right-handed alpha
Helix 9	AA9	B	71	87	Right-handed alpha
Helix 10	AB1	B	88	95	Right-handed alpha
Helix 11	AB2	B	97	104	Right-handed alpha
Helix 12	AB3	B	124	130	Right-handed alpha
Helix 13	AB4	B	223	255	Right-handed alpha
Helix 14	AB5	B	257	270	Right-handed alpha
Helix 15	AB6	C	71	87	Right-handed alpha
Helix 16	AB7	C	88	95	Right-handed alpha
Helix 17	AB8	C	125	129	Right-handed 310
Helix 18	AB9	C	169	172	Right-handed 310
Helix 19	AC1	C	222	255	Right-handed alpha
Helix 20	AC2	C	257	270	Right-handed alpha
Helix 21	AC3	D	71	87	Right-handed alpha
Helix 22	AC4	D	88	95	Right-handed alpha
Helix 23	AC5	D	97	103	Right-handed alpha
Helix 24	AC6	D	124	129	Right-handed alpha
Helix 25	AC7	D	223	256	Right-handed alpha
Helix 26	AC8	D	257	270	Right-handed alpha
Helix 27	AC9	E	68	87	Right-handed alpha
Helix 28	AD1	E	88	95	Right-handed alpha
Helix 29	AD2	E	97	104	Right-handed alpha
Helix 30	AD3	E	222	255	Right-handed alpha
Helix 31	AD4	E	257	270	Right-handed alpha
Helix 32	AD5	F	67	70	Right-handed 310
Helix 33	AD6	F	71	87	Right-handed alpha
Helix 34	AD7	F	88	95	Right-handed alpha
Helix 35	AD8	F	97	105	Right-handed alpha
Helix 36	AD9	F	112	121	Right-handed alpha
Helix 37	AE1	F	124	129	Right-handed alpha
Helix 38	AE2	F	168	172	Right-handed 310
Helix 39	AE3	F	226	255	Right-handed alpha
Helix 40	AE4	F	257	270	Right-handed alpha
Helix 41	AE5	G	67	70	Right-handed 310
Helix 42	AE6	G	71	87	Right-handed alpha
Helix 43	AE7	G	88	95	Right-handed alpha
Helix 44	AE8	G	97	104	Right-handed alpha
Helix 45	AE9	G	225	255	Right-handed alpha
Helix 46	AF1	G	257	270	Right-handed alpha
Helix 47	AF2	H	68	70	Right-handed 310
Helix 48	AF3	H	71	87	Right-handed alpha
Helix 49	AF4	H	88	95	Right-handed alpha
Helix 50	AF5	H	97	104	Right-handed alpha
Helix 51	AF6	H	125	129	Right-handed alpha
Helix 52	AF7	H	168	172	Right-handed 310
Helix 53	AF8	H	222	255	Right-handed alpha
Helix 54	AF9	H	257	270	Right-handed alpha

There are 17 sheets in PDB entry 6BAQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	132	140	first strand
Strand 2	A	153	167	anti-parallel
Strand 3	A	175	191	anti-parallel
Strand 4	A	197	206	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	144	147	first strand
Strand 2	A	153	167	anti-parallel
Strand 3	A	175	191	anti-parallel
Strand 4	A	212	215	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	132	140	first strand
Strand 2	B	153	167	anti-parallel
Strand 3	B	174	191	anti-parallel
Strand 4	B	197	206	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	144	147	first strand
Strand 2	B	153	167	anti-parallel
Strand 3	B	174	191	anti-parallel
Strand 4	B	212	215	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	132	140	first strand
Strand 2	C	153	167	anti-parallel
Strand 3	C	174	191	anti-parallel
Strand 4	C	204	206	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	212	215	first strand
Strand 2	C	174	191	anti-parallel
Strand 3	C	197	200	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	144	147	first strand
Strand 2	C	153	167	anti-parallel
Strand 3	C	174	191	anti-parallel
Strand 4	C	204	206	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	132	140	first strand
Strand 2	D	153	167	anti-parallel
Strand 3	D	174	191	anti-parallel
Strand 4	D	197	206	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	144	147	first strand
Strand 2	D	153	167	anti-parallel
Strand 3	D	174	191	anti-parallel
Strand 4	D	212	215	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	132	140	first strand
Strand 2	E	154	168	anti-parallel
Strand 3	E	173	191	anti-parallel
Strand 4	E	197	206	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	144	147	first strand
Strand 2	E	154	168	anti-parallel
Strand 3	E	173	191	anti-parallel
Strand 4	E	212	217	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	132	140	first strand
Strand 2	F	153	167	anti-parallel
Strand 3	F	175	191	anti-parallel
Strand 4	F	197	206	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	144	147	first strand
Strand 2	F	153	167	anti-parallel
Strand 3	F	175	191	anti-parallel
Strand 4	F	212	215	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	132	140	first strand
Strand 2	G	154	168	anti-parallel
Strand 3	G	173	191	anti-parallel
Strand 4	G	197	206	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	144	147	first strand
Strand 2	G	154	168	anti-parallel
Strand 3	G	173	191	anti-parallel
Strand 4	G	212	217	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	132	140	first strand
Strand 2	H	153	167	anti-parallel
Strand 3	H	175	191	anti-parallel
Strand 4	H	197	206	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	144	147	first strand
Strand 2	H	153	167	anti-parallel
Strand 3	H	175	191	anti-parallel
Strand 4	H	212	215	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6BAQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6BAQ