Analysis of interatomic Contacts of Structural Units in PDB entry:
6BAY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6BAY entry

There are 3 chains in PDB entry 6BAY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 11	LEU 515
B	GLN 11	LEU 515
C	THR 16	LEU 515

There are 50 helices in PDB entry 6BAY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	51	57	Right-handed alpha
Helix 2	AA2	A	59	64	Right-handed alpha
Helix 3	AA3	A	67	72	Right-handed 310
Helix 4	AA4	A	73	84	Right-handed alpha
Helix 5	AA5	A	130	150	Right-handed alpha
Helix 6	AA6	A	153	170	Right-handed alpha
Helix 7	AA7	A	210	220	Right-handed alpha
Helix 8	AA8	A	256	266	Right-handed alpha
Helix 9	AA9	A	298	314	Right-handed alpha
Helix 10	AB1	A	315	322	Right-handed alpha
Helix 11	AB2	A	326	345	Right-handed alpha
Helix 12	AB3	A	347	355	Right-handed alpha
Helix 13	AB4	A	355	362	Right-handed alpha
Helix 14	AB5	A	387	393	Right-handed alpha
Helix 15	AB6	A	408	413	Right-handed alpha
Helix 16	AB7	A	414	418	Right-handed 310
Helix 17	AB8	A	490	514	Right-handed alpha
Helix 18	AB9	B	17	21	Right-handed 310
Helix 19	AC1	B	51	56	Right-handed alpha
Helix 20	AC2	B	59	64	Right-handed alpha
Helix 21	AC3	B	67	71	Right-handed 310
Helix 22	AC4	B	76	86	Right-handed alpha
Helix 23	AC5	B	133	151	Right-handed alpha
Helix 24	AC6	B	153	170	Right-handed alpha
Helix 25	AC7	B	205	209	Right-handed 310
Helix 26	AC8	B	210	220	Right-handed alpha
Helix 27	AC9	B	256	266	Right-handed alpha
Helix 28	AD1	B	298	320	Right-handed alpha
Helix 29	AD2	B	321	323	Right-handed 310
Helix 30	AD3	B	328	343	Right-handed alpha
Helix 31	AD4	B	348	353	Right-handed alpha
Helix 32	AD5	B	355	364	Right-handed alpha
Helix 33	AD6	B	387	397	Right-handed alpha
Helix 34	AD7	B	408	413	Right-handed alpha
Helix 35	AD8	B	414	417	Right-handed 310
Helix 36	AD9	B	420	425	Right-handed 310
Helix 37	AE1	B	490	514	Right-handed alpha
Helix 38	AE2	C	51	56	Right-handed alpha
Helix 39	AE3	C	59	64	Right-handed alpha
Helix 40	AE4	C	67	72	Right-handed 310
Helix 41	AE5	C	76	86	Right-handed alpha
Helix 42	AE6	C	89	93	Right-handed 310
Helix 43	AE7	C	133	150	Right-handed alpha
Helix 44	AE8	C	153	169	Right-handed alpha
Helix 45	AE9	C	205	209	Right-handed 310
Helix 46	AF1	C	213	218	Right-handed alpha
Helix 47	AF2	C	246	250	Right-handed 310
Helix 48	AF3	C	256	266	Right-handed alpha
Helix 49	AF4	C	298	316	Right-handed alpha
Helix 50	AF5	C	500	505	Right-handed alpha

There are 13 sheets in PDB entry 6BAY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	29	first strand
Strand 2	A	233	237	anti-parallel
Strand 3	A	45	49	anti-parallel
Strand 4	A	34	38	anti-parallel
Strand 5	A	119	125	anti-parallel
Strand 6	A	104	114	anti-parallel
Strand 7	A	95	101	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	203	204	first strand
Strand 2	A	185	192	anti-parallel
Strand 3	A	173	179	anti-parallel
Strand 4	A	281	290	anti-parallel
Strand 5	A	270	278	anti-parallel
Strand 6	A	222	225	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	375	378	first strand
Strand 2	A	367	372	anti-parallel
Strand 3	A	438	443	anti-parallel
Strand 4	A	425	430	anti-parallel
Strand 5	A	404	406	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	449	453	first strand
Strand 2	A	477	481	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	29	first strand
Strand 2	B	233	237	anti-parallel
Strand 3	B	45	49	anti-parallel
Strand 4	B	34	38	anti-parallel
Strand 5	B	118	125	anti-parallel
Strand 6	B	104	115	anti-parallel
Strand 7	B	95	101	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	203	204	first strand
Strand 2	B	185	192	anti-parallel
Strand 3	B	173	178	anti-parallel
Strand 4	B	281	290	anti-parallel
Strand 5	B	270	278	anti-parallel
Strand 6	B	223	225	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	369	371	first strand
Strand 2	B	376	378	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	404	405	first strand
Strand 2	B	427	430	anti-parallel
Strand 3	B	438	439	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	449	453	first strand
Strand 2	B	477	481	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	460	462	first strand
Strand 2	B	469	471	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	29	first strand
Strand 2	C	233	237	anti-parallel
Strand 3	C	45	49	anti-parallel
Strand 4	C	36	38	anti-parallel
Strand 5	C	118	123	anti-parallel
Strand 6	C	107	115	anti-parallel
Strand 7	C	96	98	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	175	177	first strand
Strand 2	C	285	287	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	222	225	first strand
Strand 2	C	271	274	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6BAY

Analysis of interatomic Contacts of Structural Units in PDB entry:
6BAY