Analysis of interatomic Contacts of Structural Units in PDB entry:
6BB3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6BB3 entry

There are 4 chains in PDB entry 6BB3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 1	PHE 331
B	ALA 1	PHE 331
C	ALA 1	PHE 331
D	ALA 1	PHE 331

There are 56 helices in PDB entry 6BB3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	7	Right-handed alpha
Helix 2	AA2	A	28	41	Right-handed alpha
Helix 3	AA3	A	53	66	Right-handed alpha
Helix 4	AA4	A	67	71	Right-handed 310
Helix 5	AA5	A	81	86	Right-handed 310
Helix 6	AA6	A	104	127	Right-handed alpha
Helix 7	AA7	A	138	151	Right-handed alpha
Helix 8	AA8	A	153	155	Right-handed 310
Helix 9	AA9	A	162	178	Right-handed alpha
Helix 10	AB1	A	180	182	Right-handed 310
Helix 11	AB2	A	210	214	Right-handed alpha
Helix 12	AB3	A	226	245	Right-handed alpha
Helix 13	AB4	A	248	264	Right-handed alpha
Helix 14	AB5	A	308	327	Right-handed alpha
Helix 15	AB6	B	2	7	Right-handed alpha
Helix 16	AB7	B	28	42	Right-handed alpha
Helix 17	AB8	B	53	66	Right-handed alpha
Helix 18	AB9	B	67	71	Right-handed 310
Helix 19	AC1	B	81	86	Right-handed 310
Helix 20	AC2	B	107	127	Right-handed alpha
Helix 21	AC3	B	138	151	Right-handed alpha
Helix 22	AC4	B	153	155	Right-handed 310
Helix 23	AC5	B	162	178	Right-handed alpha
Helix 24	AC6	B	180	182	Right-handed 310
Helix 25	AC7	B	210	214	Right-handed alpha
Helix 26	AC8	B	227	245	Right-handed alpha
Helix 27	AC9	B	248	264	Right-handed alpha
Helix 28	AD1	B	308	327	Right-handed alpha
Helix 29	AD2	C	2	7	Right-handed alpha
Helix 30	AD3	C	28	41	Right-handed alpha
Helix 31	AD4	C	53	66	Right-handed alpha
Helix 32	AD5	C	67	71	Right-handed 310
Helix 33	AD6	C	81	86	Right-handed 310
Helix 34	AD7	C	105	127	Right-handed alpha
Helix 35	AD8	C	138	151	Right-handed alpha
Helix 36	AD9	C	153	155	Right-handed 310
Helix 37	AE1	C	162	178	Right-handed alpha
Helix 38	AE2	C	180	182	Right-handed 310
Helix 39	AE3	C	210	214	Right-handed alpha
Helix 40	AE4	C	227	245	Right-handed alpha
Helix 41	AE5	C	248	264	Right-handed alpha
Helix 42	AE6	C	308	327	Right-handed alpha
Helix 43	AE7	D	2	7	Right-handed alpha
Helix 44	AE8	D	28	41	Right-handed alpha
Helix 45	AE9	D	53	66	Right-handed alpha
Helix 46	AF1	D	67	71	Right-handed 310
Helix 47	AF2	D	81	86	Right-handed 310
Helix 48	AF3	D	107	127	Right-handed alpha
Helix 49	AF4	D	138	151	Right-handed alpha
Helix 50	AF5	D	153	155	Right-handed 310
Helix 51	AF6	D	162	178	Right-handed alpha
Helix 52	AF7	D	180	182	Right-handed 310
Helix 53	AF8	D	210	214	Right-handed alpha
Helix 54	AF9	D	226	245	Right-handed alpha
Helix 55	AG1	D	248	264	Right-handed alpha
Helix 56	AG2	D	308	327	Right-handed alpha

There are 12 sheets in PDB entry 6BB3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	10	first strand
Strand 2	D	298	303	anti-parallel
Strand 3	D	287	295	anti-parallel
Strand 4	D	268	275	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	78	first strand
Strand 2	A	46	50	parallel
Strand 3	A	21	25	parallel
Strand 4	A	90	93	parallel
Strand 5	A	131	134	parallel
Strand 6	A	157	159	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	184	189	first strand
Strand 2	A	197	205	anti-parallel
Strand 3	A	208	209	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	268	275	first strand
Strand 2	A	287	295	anti-parallel
Strand 3	A	298	303	anti-parallel
Strand 4	D	8	10	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	10	first strand
Strand 2	C	298	303	anti-parallel
Strand 3	C	287	295	anti-parallel
Strand 4	C	268	275	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	75	78	first strand
Strand 2	B	46	50	parallel
Strand 3	B	21	25	parallel
Strand 4	B	90	93	parallel
Strand 5	B	131	134	parallel
Strand 6	B	157	159	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	184	189	first strand
Strand 2	B	197	205	anti-parallel
Strand 3	B	208	209	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	268	275	first strand
Strand 2	B	287	295	anti-parallel
Strand 3	B	298	303	anti-parallel
Strand 4	C	8	10	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	75	78	first strand
Strand 2	C	46	50	parallel
Strand 3	C	21	25	parallel
Strand 4	C	90	93	parallel
Strand 5	C	131	134	parallel
Strand 6	C	157	159	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	184	189	first strand
Strand 2	C	197	205	anti-parallel
Strand 3	C	208	209	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	75	78	first strand
Strand 2	D	46	50	parallel
Strand 3	D	21	25	parallel
Strand 4	D	90	93	parallel
Strand 5	D	131	134	parallel
Strand 6	D	157	159	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	184	189	first strand
Strand 2	D	197	205	anti-parallel
Strand 3	D	208	209	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6BB3

Analysis of interatomic Contacts of Structural Units in PDB entry:
6BB3