Analysis of interatomic Contacts of Structural Units in PDB entry:
6BBA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6BBA entry

There are 21 chains in PDB entry 6BBA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 57	ASP 295
B	SER 57	ASP 294
C	SER 57	ASP 294
D	SER 57	ASP 294
E	SER 57	GLN 293
F	SER 57	GLN 293
G	SER 57	GLN 293
H	PRO 4	PRO 4
H	ALA 6	PRO 7
I	PRO 4	PRO 4
I	ALA 6	PRO 7
J	PRO 4	PRO 4
J	ALA 6	PRO 7
K	PRO 4	PRO 4
K	ALA 6	PRO 7
L	PRO 4	PRO 4
L	ALA 6	PRO 7
M	PRO 4	PRO 4
M	ALA 6	PRO 7
N	PRO 4	PRO 4
N	ALA 6	PRO 7

There are 49 helices in PDB entry 6BBA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	118	125	Right-handed alpha
Helix 2	AA2	A	135	153	Right-handed alpha
Helix 3	AA3	A	168	182	Right-handed alpha
Helix 4	AA4	A	196	204	Right-handed alpha
Helix 5	AA5	A	237	257	Right-handed alpha
Helix 6	AA6	A	259	265	Right-handed alpha
Helix 7	AA7	A	274	281	Right-handed alpha
Helix 8	AA8	B	118	125	Right-handed alpha
Helix 9	AA9	B	135	153	Right-handed alpha
Helix 10	AB1	B	168	182	Right-handed alpha
Helix 11	AB2	B	196	204	Right-handed alpha
Helix 12	AB3	B	237	257	Right-handed alpha
Helix 13	AB4	B	259	267	Right-handed alpha
Helix 14	AB5	B	274	282	Right-handed alpha
Helix 15	AB6	C	118	125	Right-handed alpha
Helix 16	AB7	C	135	153	Right-handed alpha
Helix 17	AB8	C	168	182	Right-handed alpha
Helix 18	AB9	C	196	204	Right-handed alpha
Helix 19	AC1	C	237	257	Right-handed alpha
Helix 20	AC2	C	259	269	Right-handed alpha
Helix 21	AC3	C	274	281	Right-handed alpha
Helix 22	AC4	D	118	125	Right-handed alpha
Helix 23	AC5	D	135	153	Right-handed alpha
Helix 24	AC6	D	168	182	Right-handed alpha
Helix 25	AC7	D	196	204	Right-handed alpha
Helix 26	AC8	D	237	257	Right-handed alpha
Helix 27	AC9	D	259	269	Right-handed alpha
Helix 28	AD1	D	274	282	Right-handed alpha
Helix 29	AD2	E	118	125	Right-handed alpha
Helix 30	AD3	E	135	153	Right-handed alpha
Helix 31	AD4	E	168	182	Right-handed alpha
Helix 32	AD5	E	196	203	Right-handed alpha
Helix 33	AD6	E	237	257	Right-handed alpha
Helix 34	AD7	E	259	268	Right-handed alpha
Helix 35	AD8	E	274	282	Right-handed alpha
Helix 36	AD9	F	118	125	Right-handed alpha
Helix 37	AE1	F	135	153	Right-handed alpha
Helix 38	AE2	F	168	182	Right-handed alpha
Helix 39	AE3	F	196	204	Right-handed alpha
Helix 40	AE4	F	237	257	Right-handed alpha
Helix 41	AE5	F	259	269	Right-handed alpha
Helix 42	AE6	F	274	281	Right-handed alpha
Helix 43	AE7	G	118	125	Right-handed alpha
Helix 44	AE8	G	135	153	Right-handed alpha
Helix 45	AE9	G	168	182	Right-handed alpha
Helix 46	AF1	G	196	204	Right-handed alpha
Helix 47	AF2	G	237	257	Right-handed alpha
Helix 48	AF3	G	259	268	Right-handed alpha
Helix 49	AF4	G	274	281	Right-handed alpha

There are 21 sheets in PDB entry 6BBA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	107	first strand
Strand 2	A	114	117	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	127	131	first strand
Strand 2	A	158	164	parallel
Strand 3	A	186	195	parallel
Strand 4	A	217	219	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	127	131	first strand
Strand 2	A	158	164	parallel
Strand 3	A	186	195	parallel
Strand 4	A	210	212	parallel
Strand 5	A	286	287	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	104	107	first strand
Strand 2	B	114	117	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	131	first strand
Strand 2	B	158	164	parallel
Strand 3	B	186	195	parallel
Strand 4	B	217	219	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	131	first strand
Strand 2	B	158	164	parallel
Strand 3	B	186	195	parallel
Strand 4	B	210	212	parallel
Strand 5	B	286	287	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	104	105	first strand
Strand 2	C	116	117	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	127	131	first strand
Strand 2	C	158	164	parallel
Strand 3	C	186	195	parallel
Strand 4	C	217	219	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	127	131	first strand
Strand 2	C	158	164	parallel
Strand 3	C	186	195	parallel
Strand 4	C	210	212	parallel
Strand 5	C	286	287	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	104	107	first strand
Strand 2	D	114	117	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	127	131	first strand
Strand 2	D	158	164	parallel
Strand 3	D	186	195	parallel
Strand 4	D	217	219	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	127	131	first strand
Strand 2	D	158	164	parallel
Strand 3	D	186	195	parallel
Strand 4	D	210	212	parallel
Strand 5	D	286	287	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	104	106	first strand
Strand 2	E	115	117	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	127	131	first strand
Strand 2	E	158	164	parallel
Strand 3	E	186	195	parallel
Strand 4	E	217	219	parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	127	131	first strand
Strand 2	E	158	164	parallel
Strand 3	E	186	195	parallel
Strand 4	E	210	212	parallel
Strand 5	E	286	287	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	104	107	first strand
Strand 2	F	114	117	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	127	131	first strand
Strand 2	F	158	164	parallel
Strand 3	F	186	195	parallel
Strand 4	F	217	219	parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	127	131	first strand
Strand 2	F	158	164	parallel
Strand 3	F	186	195	parallel
Strand 4	F	210	212	parallel
Strand 5	F	286	287	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	104	107	first strand
Strand 2	G	114	117	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	127	131	first strand
Strand 2	G	158	164	parallel
Strand 3	G	186	195	parallel
Strand 4	G	217	219	parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	127	131	first strand
Strand 2	G	158	164	parallel
Strand 3	G	186	195	parallel
Strand 4	G	210	212	parallel
Strand 5	G	286	287	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6BBA

Analysis of interatomic Contacts of Structural Units in PDB entry:
6BBA