Analysis of interatomic Contacts of Structural Units in PDB entry:
6BBJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6BBJ entry

There are 4 chains in PDB entry 6BBJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 144	TRP 784
B	MET 144	TRP 784
C	MET 144	TRP 784
D	MET 144	TRP 784

There are112 helices in PDB entry 6BBJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	146	157	Right-handed alpha
Helix 2	AA2	A	158	163	Right-handed 310
Helix 3	AA3	A	164	172	Right-handed alpha
Helix 4	AA4	A	189	197	Right-handed alpha
Helix 5	AA5	A	204	217	Right-handed alpha
Helix 6	AA6	A	218	223	Right-handed alpha
Helix 7	AA7	A	236	244	Right-handed alpha
Helix 8	AA8	A	246	256	Right-handed alpha
Helix 9	AA9	A	283	291	Right-handed alpha
Helix 10	AB1	A	293	302	Right-handed alpha
Helix 11	AB2	A	319	327	Right-handed alpha
Helix 12	AB3	A	333	353	Right-handed alpha
Helix 13	AB4	A	357	361	Right-handed 310
Helix 14	AB5	A	368	377	Right-handed alpha
Helix 15	AB6	A	379	387	Right-handed alpha
Helix 16	AB7	A	392	399	Right-handed 310
Helix 17	AB8	A	428	436	Right-handed alpha
Helix 18	AB9	A	441	446	Right-handed alpha
Helix 19	AC1	A	448	486	Right-handed alpha
Helix 20	AC2	A	500	530	Right-handed alpha
Helix 21	AC3	A	543	566	Right-handed alpha
Helix 22	AC4	A	569	584	Right-handed alpha
Helix 23	AC5	A	585	590	Right-handed 310
Helix 24	AC6	A	598	632	Right-handed alpha
Helix 25	AC7	A	661	675	Right-handed alpha
Helix 26	AC8	A	687	715	Right-handed alpha
Helix 27	AC9	A	720	725	Right-handed alpha
Helix 28	AD1	A	727	744	Right-handed alpha
Helix 29	AD2	B	146	157	Right-handed alpha
Helix 30	AD3	B	158	163	Right-handed 310
Helix 31	AD4	B	164	172	Right-handed alpha
Helix 32	AD5	B	189	197	Right-handed alpha
Helix 33	AD6	B	204	217	Right-handed alpha
Helix 34	AD7	B	218	223	Right-handed alpha
Helix 35	AD8	B	236	244	Right-handed alpha
Helix 36	AD9	B	246	256	Right-handed alpha
Helix 37	AE1	B	283	291	Right-handed alpha
Helix 38	AE2	B	293	302	Right-handed alpha
Helix 39	AE3	B	319	327	Right-handed alpha
Helix 40	AE4	B	333	353	Right-handed alpha
Helix 41	AE5	B	357	361	Right-handed 310
Helix 42	AE6	B	368	377	Right-handed alpha
Helix 43	AE7	B	379	387	Right-handed alpha
Helix 44	AE8	B	392	399	Right-handed 310
Helix 45	AE9	B	428	436	Right-handed alpha
Helix 46	AF1	B	441	446	Right-handed alpha
Helix 47	AF2	B	448	486	Right-handed alpha
Helix 48	AF3	B	500	530	Right-handed alpha
Helix 49	AF4	B	543	566	Right-handed alpha
Helix 50	AF5	B	569	584	Right-handed alpha
Helix 51	AF6	B	585	590	Right-handed 310
Helix 52	AF7	B	598	632	Right-handed alpha
Helix 53	AF8	B	661	675	Right-handed alpha
Helix 54	AF9	B	687	715	Right-handed alpha
Helix 55	AG1	B	720	725	Right-handed alpha
Helix 56	AG2	B	727	744	Right-handed alpha
Helix 57	AG3	C	146	157	Right-handed alpha
Helix 58	AG4	C	158	163	Right-handed 310
Helix 59	AG5	C	164	172	Right-handed alpha
Helix 60	AG6	C	189	197	Right-handed alpha
Helix 61	AG7	C	204	217	Right-handed alpha
Helix 62	AG8	C	218	223	Right-handed alpha
Helix 63	AG9	C	236	244	Right-handed alpha
Helix 64	AH1	C	246	256	Right-handed alpha
Helix 65	AH2	C	283	291	Right-handed alpha
Helix 66	AH3	C	293	302	Right-handed alpha
Helix 67	AH4	C	319	327	Right-handed alpha
Helix 68	AH5	C	333	353	Right-handed alpha
Helix 69	AH6	C	357	361	Right-handed 310
Helix 70	AH7	C	368	377	Right-handed alpha
Helix 71	AH8	C	379	387	Right-handed alpha
Helix 72	AH9	C	392	399	Right-handed 310
Helix 73	AI1	C	428	436	Right-handed alpha
Helix 74	AI2	C	441	446	Right-handed alpha
Helix 75	AI3	C	448	486	Right-handed alpha
Helix 76	AI4	C	500	530	Right-handed alpha
Helix 77	AI5	C	543	566	Right-handed alpha
Helix 78	AI6	C	569	584	Right-handed alpha
Helix 79	AI7	C	585	590	Right-handed 310
Helix 80	AI8	C	598	632	Right-handed alpha
Helix 81	AI9	C	661	675	Right-handed alpha
Helix 82	AJ1	C	687	715	Right-handed alpha
Helix 83	AJ2	C	720	725	Right-handed alpha
Helix 84	AJ3	C	727	744	Right-handed alpha
Helix 85	AJ4	D	146	157	Right-handed alpha
Helix 86	AJ5	D	158	163	Right-handed 310
Helix 87	AJ6	D	164	172	Right-handed alpha
Helix 88	AJ7	D	189	197	Right-handed alpha
Helix 89	AJ8	D	204	217	Right-handed alpha
Helix 90	AJ9	D	218	223	Right-handed alpha
Helix 91	AK1	D	236	244	Right-handed alpha
Helix 92	AK2	D	246	256	Right-handed alpha
Helix 93	AK3	D	283	291	Right-handed alpha
Helix 94	AK4	D	293	302	Right-handed alpha
Helix 95	AK5	D	319	327	Right-handed alpha
Helix 96	AK6	D	333	353	Right-handed alpha
Helix 97	AK7	D	357	361	Right-handed 310
Helix 98	AK8	D	368	377	Right-handed alpha
Helix 99	AK9	D	379	387	Right-handed alpha
Helix 100	AL1	D	392	399	Right-handed 310
Helix 101	AL2	D	428	436	Right-handed alpha
Helix 102	AL3	D	441	446	Right-handed alpha
Helix 103	AL4	D	448	486	Right-handed alpha
Helix 104	AL5	D	500	530	Right-handed alpha
Helix 105	AL6	D	543	566	Right-handed alpha
Helix 106	AL7	D	569	584	Right-handed alpha
Helix 107	AL8	D	585	590	Right-handed 310
Helix 108	AL9	D	598	632	Right-handed alpha
Helix 109	AM1	D	661	675	Right-handed alpha
Helix 110	AM2	D	687	715	Right-handed alpha
Helix 111	AM3	D	720	725	Right-handed alpha
Helix 112	AM4	D	727	744	Right-handed alpha

There are 4 sheets in PDB entry 6BBJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	401	407	first strand
Strand 2	A	410	416	anti-parallel
Strand 3	A	771	779	anti-parallel
Strand 4	A	756	758	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	401	407	first strand
Strand 2	B	410	416	anti-parallel
Strand 3	B	771	779	anti-parallel
Strand 4	B	756	758	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	401	407	first strand
Strand 2	C	410	416	anti-parallel
Strand 3	C	771	779	anti-parallel
Strand 4	C	756	758	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	401	407	first strand
Strand 2	D	410	416	anti-parallel
Strand 3	D	771	779	anti-parallel
Strand 4	D	756	758	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6BBJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6BBJ