Analysis of interatomic Contacts of Structural Units in PDB entry:
6BBM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6BBM entry

There are 11 chains in PDB entry 6BBM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 27	TYR 468
B	ASP 18	ALA 464
C	PRO 19	GLU 471
D	ARG 17	GLU 471
E	ASP 18	GLU 471
F	VAL 21	TYR 468
V	UNK 109	UNK 233
W	UNK 109	UNK 233
X	UNK 113	UNK 233
Y	UNK 110	UNK 233
Z	UNK 111	UNK 233

There are166 helices in PDB entry 6BBM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	31	41	Right-handed alpha
Helix 2	AA2	A	47	55	Right-handed alpha
Helix 3	AA3	A	63	68	Right-handed alpha
Helix 4	AA4	A	71	79	Right-handed alpha
Helix 5	AA5	A	84	91	Right-handed alpha
Helix 6	AA6	A	101	105	Right-handed 310
Helix 7	AA7	A	119	130	Right-handed alpha
Helix 8	AA8	A	131	140	Right-handed alpha
Helix 9	AA9	A	141	146	Right-handed alpha
Helix 10	AB1	A	153	159	Right-handed alpha
Helix 11	AB2	A	211	219	Right-handed alpha
Helix 12	AB3	A	236	248	Right-handed alpha
Helix 13	AB4	A	264	277	Right-handed alpha
Helix 14	AB5	A	293	305	Right-handed alpha
Helix 15	AB6	A	319	331	Right-handed alpha
Helix 16	AB7	A	344	348	Right-handed 310
Helix 17	AB8	A	356	363	Right-handed alpha
Helix 18	AB9	A	364	373	Right-handed alpha
Helix 19	AC1	A	388	392	Right-handed 310
Helix 20	AC2	A	398	402	Right-handed 310
Helix 21	AC3	A	420	425	Right-handed alpha
Helix 22	AC4	B	30	36	Right-handed alpha
Helix 23	AC5	B	37	44	Right-handed alpha
Helix 24	AC6	B	47	55	Right-handed alpha
Helix 25	AC7	B	62	72	Right-handed alpha
Helix 26	AC8	B	83	95	Right-handed alpha
Helix 27	AC9	B	103	111	Right-handed alpha
Helix 28	AD1	B	118	129	Right-handed alpha
Helix 29	AD2	B	130	142	Right-handed alpha
Helix 30	AD3	B	153	166	Right-handed alpha
Helix 31	AD4	B	183	191	Right-handed alpha
Helix 32	AD5	B	213	217	Right-handed 310
Helix 33	AD6	B	236	249	Right-handed alpha
Helix 34	AD7	B	268	275	Right-handed alpha
Helix 35	AD8	B	280	284	Right-handed 310
Helix 36	AD9	B	293	300	Right-handed alpha
Helix 37	AE1	B	301	305	Right-handed 310
Helix 38	AE2	B	321	334	Right-handed alpha
Helix 39	AE3	B	345	348	Right-handed 310
Helix 40	AE4	B	357	375	Right-handed alpha
Helix 41	AE5	B	387	392	Right-handed 310
Helix 42	AE6	B	408	412	Right-handed 310
Helix 43	AE7	C	31	44	Right-handed alpha
Helix 44	AE8	C	47	52	Right-handed alpha
Helix 45	AE9	C	64	78	Right-handed alpha
Helix 46	AF1	C	85	94	Right-handed alpha
Helix 47	AF2	C	96	101	Right-handed alpha
Helix 48	AF3	C	102	107	Right-handed alpha
Helix 49	AF4	C	108	110	Right-handed 310
Helix 50	AF5	C	118	132	Right-handed alpha
Helix 51	AF6	C	133	136	Right-handed 310
Helix 52	AF7	C	154	164	Right-handed alpha
Helix 53	AF8	C	182	191	Right-handed alpha
Helix 54	AF9	C	192	194	Right-handed 310
Helix 55	AG1	C	236	246	Right-handed alpha
Helix 56	AG2	C	264	277	Right-handed alpha
Helix 57	AG3	C	292	304	Right-handed alpha
Helix 58	AG4	C	320	333	Right-handed alpha
Helix 59	AG5	C	344	348	Right-handed 310
Helix 60	AG6	C	356	361	Right-handed alpha
Helix 61	AG7	C	364	369	Right-handed alpha
Helix 62	AG8	C	386	392	Right-handed 310
Helix 63	AG9	C	398	402	Right-handed 310
Helix 64	AH1	C	422	424	Right-handed 310
Helix 65	AH2	D	31	43	Right-handed alpha
Helix 66	AH3	D	47	55	Right-handed alpha
Helix 67	AH4	D	62	71	Right-handed alpha
Helix 68	AH5	D	72	79	Right-handed alpha
Helix 69	AH6	D	84	93	Right-handed alpha
Helix 70	AH7	D	102	112	Right-handed alpha
Helix 71	AH8	D	121	128	Right-handed alpha
Helix 72	AH9	D	130	139	Right-handed alpha
Helix 73	AI1	D	157	165	Right-handed alpha
Helix 74	AI2	D	182	192	Right-handed alpha
Helix 75	AI3	D	213	217	Right-handed 310
Helix 76	AI4	D	237	248	Right-handed alpha
Helix 77	AI5	D	264	277	Right-handed alpha
Helix 78	AI6	D	281	286	Right-handed alpha
Helix 79	AI7	D	292	307	Right-handed alpha
Helix 80	AI8	D	323	328	Right-handed alpha
Helix 81	AI9	D	344	348	Right-handed 310
Helix 82	AJ1	D	356	369	Right-handed alpha
Helix 83	AJ2	D	386	392	Right-handed 310
Helix 84	AJ3	D	398	402	Right-handed 310
Helix 85	AJ4	D	407	412	Right-handed alpha
Helix 86	AJ5	D	420	425	Right-handed alpha
Helix 87	AJ6	D	455	458	Right-handed 310
Helix 88	AJ7	E	30	43	Right-handed alpha
Helix 89	AJ8	E	47	52	Right-handed alpha
Helix 90	AJ9	E	62	77	Right-handed alpha
Helix 91	AK1	E	83	94	Right-handed alpha
Helix 92	AK2	E	105	110	Right-handed alpha
Helix 93	AK3	E	118	121	Right-handed 310
Helix 94	AK4	E	122	144	Right-handed alpha
Helix 95	AK5	E	153	154	Right-handed 310
Helix 96	AK6	E	155	155	Right-handed 310
Helix 97	AK7	E	156	170	Right-handed alpha
Helix 98	AK8	E	182	191	Right-handed alpha
Helix 99	AK9	E	213	218	Right-handed alpha
Helix 100	AL1	E	236	247	Right-handed alpha
Helix 101	AL2	E	264	273	Right-handed alpha
Helix 102	AL3	E	281	286	Right-handed alpha
Helix 103	AL4	E	291	305	Right-handed alpha
Helix 104	AL5	E	323	334	Right-handed alpha
Helix 105	AL6	E	363	367	Right-handed 310
Helix 106	AL7	E	368	376	Right-handed alpha
Helix 107	AL8	E	386	391	Right-handed 310
Helix 108	AL9	E	398	402	Right-handed 310
Helix 109	AM1	E	407	412	Right-handed alpha
Helix 110	AM2	E	420	424	Right-handed 310
Helix 111	AM3	F	30	43	Right-handed alpha
Helix 112	AM4	F	45	47	Right-handed 310
Helix 113	AM5	F	48	53	Right-handed alpha
Helix 114	AM6	F	62	78	Right-handed alpha
Helix 115	AM7	F	84	95	Right-handed alpha
Helix 116	AM8	F	104	112	Right-handed alpha
Helix 117	AM9	F	121	129	Right-handed alpha
Helix 118	AN1	F	129	147	Right-handed alpha
Helix 119	AN2	F	156	170	Right-handed alpha
Helix 120	AN3	F	183	194	Right-handed alpha
Helix 121	AN4	F	214	219	Right-handed alpha
Helix 122	AN5	F	238	250	Right-handed alpha
Helix 123	AN6	F	264	273	Right-handed alpha
Helix 124	AN7	F	281	286	Right-handed alpha
Helix 125	AN8	F	293	305	Right-handed alpha
Helix 126	AN9	F	320	325	Right-handed alpha
Helix 127	AO1	F	326	334	Right-handed alpha
Helix 128	AO2	F	344	348	Right-handed 310
Helix 129	AO3	F	356	365	Right-handed alpha
Helix 130	AO4	F	368	373	Right-handed alpha
Helix 131	AO5	F	386	392	Right-handed 310
Helix 132	AO6	F	398	402	Right-handed 310
Helix 133	AO7	F	420	424	Right-handed 310
Helix 134	AO8	V	117	129	Right-handed alpha
Helix 135	AO9	V	140	148	Right-handed alpha
Helix 136	AP1	V	154	163	Right-handed alpha
Helix 137	AP2	V	176	186	Right-handed alpha
Helix 138	AP3	V	221	228	Right-handed alpha
Helix 139	AP4	W	120	128	Right-handed alpha
Helix 140	AP5	W	141	146	Right-handed alpha
Helix 141	AP6	W	147	150	Right-handed 310
Helix 142	AP7	W	153	163	Right-handed alpha
Helix 143	AP8	W	176	178	Right-handed 310
Helix 144	AP9	W	179	185	Right-handed alpha
Helix 145	AQ1	W	200	205	Right-handed alpha
Helix 146	AQ2	W	221	232	Right-handed alpha
Helix 147	AQ3	X	123	134	Right-handed alpha
Helix 148	AQ4	X	140	144	Right-handed 310
Helix 149	AQ5	X	145	154	Right-handed alpha
Helix 150	AQ6	X	157	165	Right-handed alpha
Helix 151	AQ7	X	177	187	Right-handed 310
Helix 152	AQ8	X	226	230	Right-handed 310
Helix 153	AQ9	Y	120	129	Right-handed alpha
Helix 154	AR1	Y	143	148	Right-handed alpha
Helix 155	AR2	Y	153	158	Right-handed alpha
Helix 156	AR3	Y	180	189	Right-handed alpha
Helix 157	AR4	Y	200	205	Right-handed alpha
Helix 158	AR5	Y	221	232	Right-handed alpha
Helix 159	AR6	Z	119	131	Right-handed alpha
Helix 160	AR7	Z	140	145	Right-handed alpha
Helix 161	AR8	Z	146	148	Right-handed 310
Helix 162	AR9	Z	153	157	Right-handed 310
Helix 163	AS1	Z	166	171	Right-handed alpha
Helix 164	AS2	Z	180	188	Right-handed alpha
Helix 165	AS3	Z	202	207	Right-handed alpha
Helix 166	AS4	Z	221	231	Right-handed alpha

There are 14 sheets in PDB entry 6BBM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	310	313	first strand
Strand 2	A	256	260	parallel
Strand 3	A	340	343	parallel
Strand 4	A	379	382	parallel
Strand 5	A	227	229	parallel
Strand 6	A	414	419	parallel
Strand 7	A	433	441	anti-parallel
Strand 8	A	449	453	anti-parallel
Strand 9	A	460	463	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	258	260	first strand
Strand 2	B	340	343	parallel
Strand 3	B	379	382	parallel
Strand 4	B	226	230	parallel
Strand 5	B	414	419	parallel
Strand 6	B	433	440	anti-parallel
Strand 7	B	448	452	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	311	313	first strand
Strand 2	C	257	259	parallel
Strand 3	C	341	342	parallel
Strand 4	C	380	383	parallel
Strand 5	C	227	230	parallel
Strand 6	C	414	420	parallel
Strand 7	C	433	441	anti-parallel
Strand 8	C	447	448	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	311	313	first strand
Strand 2	C	257	259	parallel
Strand 3	C	341	342	parallel
Strand 4	C	380	383	parallel
Strand 5	C	227	230	parallel
Strand 6	C	414	420	parallel
Strand 7	C	433	441	anti-parallel
Strand 8	C	451	452	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	381	383	first strand
Strand 2	D	227	231	parallel
Strand 3	D	414	418	parallel
Strand 4	D	437	441	anti-parallel
Strand 5	D	447	448	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	258	260	first strand
Strand 2	D	341	343	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	451	454	first strand
Strand 2	D	459	462	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	179	180	first strand
Strand 2	F	311	313	anti-parallel
Strand 3	F	257	259	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	227	231	first strand
Strand 2	E	414	418	parallel
Strand 3	E	435	438	anti-parallel
Strand 4	E	447	450	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	257	259	first strand
Strand 2	E	340	342	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	452	454	first strand
Strand 2	E	459	461	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	228	229	first strand
Strand 2	F	414	416	parallel
Strand 3	F	438	441	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	341	342	first strand
Strand 2	F	380	381	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	433	436	first strand
Strand 2	F	449	454	anti-parallel
Strand 3	F	459	461	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6BBM

Analysis of interatomic Contacts of Structural Units in PDB entry:
6BBM