Analysis of interatomic Contacts of Structural Units in PDB entry:
6BBN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6BBN entry

There are 6 chains in PDB entry 6BBN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 2	VAL 437
B	MET 1	ASP 441
C	MET 1	VAL 440
D	MET 1	ASP 441
P	ASP 13	LYS 167
E	SER 157	GLU 552

There are102 helices in PDB entry 6BBN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	29	Right-handed alpha
Helix 2	AA2	A	47	51	Right-handed 310
Helix 3	AA3	A	71	81	Right-handed alpha
Helix 4	AA4	A	88	90	Right-handed 310
Helix 5	AA5	A	102	108	Right-handed alpha
Helix 6	AA6	A	108	113	Right-handed alpha
Helix 7	AA7	A	114	128	Right-handed alpha
Helix 8	AA8	A	143	156	Right-handed alpha
Helix 9	AA9	A	182	193	Right-handed alpha
Helix 10	AB1	A	205	216	Right-handed alpha
Helix 11	AB2	A	223	239	Right-handed alpha
Helix 12	AB3	A	239	244	Right-handed alpha
Helix 13	AB4	A	251	259	Right-handed alpha
Helix 14	AB5	A	287	295	Right-handed alpha
Helix 15	AB6	A	324	339	Right-handed alpha
Helix 16	AB7	A	384	400	Right-handed alpha
Helix 17	AB8	A	405	411	Right-handed alpha
Helix 18	AB9	A	415	435	Right-handed alpha
Helix 19	AC1	B	10	29	Right-handed alpha
Helix 20	AC2	B	41	47	Right-handed 310
Helix 21	AC3	B	49	51	Right-handed 310
Helix 22	AC4	B	72	80	Right-handed alpha
Helix 23	AC5	B	81	86	Right-handed 310
Helix 24	AC6	B	88	90	Right-handed 310
Helix 25	AC7	B	102	108	Right-handed alpha
Helix 26	AC8	B	114	128	Right-handed alpha
Helix 27	AC9	B	144	161	Right-handed alpha
Helix 28	AD1	B	182	198	Right-handed alpha
Helix 29	AD2	B	205	215	Right-handed alpha
Helix 30	AD3	B	223	239	Right-handed alpha
Helix 31	AD4	B	239	244	Right-handed alpha
Helix 32	AD5	B	251	260	Right-handed alpha
Helix 33	AD6	B	287	297	Right-handed alpha
Helix 34	AD7	B	298	301	Right-handed 310
Helix 35	AD8	B	306	310	Right-handed 310
Helix 36	AD9	B	324	339	Right-handed alpha
Helix 37	AE1	B	340	343	Right-handed 310
Helix 38	AE2	B	384	400	Right-handed alpha
Helix 39	AE3	B	405	410	Right-handed alpha
Helix 40	AE4	B	414	437	Right-handed alpha
Helix 41	AE5	C	10	29	Right-handed alpha
Helix 42	AE6	C	47	51	Right-handed 310
Helix 43	AE7	C	72	81	Right-handed alpha
Helix 44	AE8	C	88	90	Right-handed 310
Helix 45	AE9	C	102	108	Right-handed alpha
Helix 46	AF1	C	111	127	Right-handed alpha
Helix 47	AF2	C	143	161	Right-handed alpha
Helix 48	AF3	C	182	195	Right-handed alpha
Helix 49	AF4	C	206	216	Right-handed alpha
Helix 50	AF5	C	223	244	Right-handed alpha
Helix 51	AF6	C	251	257	Right-handed alpha
Helix 52	AF7	C	287	295	Right-handed alpha
Helix 53	AF8	C	296	301	Right-handed 310
Helix 54	AF9	C	306	310	Right-handed 310
Helix 55	AG1	C	324	337	Right-handed alpha
Helix 56	AG2	C	381	383	Right-handed 310
Helix 57	AG3	C	384	399	Right-handed alpha
Helix 58	AG4	C	404	410	Right-handed alpha
Helix 59	AG5	C	415	435	Right-handed alpha
Helix 60	AG6	D	10	28	Right-handed alpha
Helix 61	AG7	D	40	44	Right-handed 310
Helix 62	AG8	D	48	51	Right-handed 310
Helix 63	AG9	D	74	80	Right-handed alpha
Helix 64	AH1	D	102	108	Right-handed alpha
Helix 65	AH2	D	110	127	Right-handed alpha
Helix 66	AH3	D	144	161	Right-handed alpha
Helix 67	AH4	D	182	198	Right-handed alpha
Helix 68	AH5	D	206	216	Right-handed alpha
Helix 69	AH6	D	225	244	Right-handed alpha
Helix 70	AH7	D	251	258	Right-handed alpha
Helix 71	AH8	D	288	296	Right-handed alpha
Helix 72	AH9	D	297	301	Right-handed 310
Helix 73	AI1	D	324	339	Right-handed alpha
Helix 74	AI2	D	340	343	Right-handed 310
Helix 75	AI3	D	384	395	Right-handed alpha
Helix 76	AI4	D	395	400	Right-handed alpha
Helix 77	AI5	D	404	410	Right-handed alpha
Helix 78	AI6	D	415	435	Right-handed alpha
Helix 79	AI7	P	15	25	Right-handed alpha
Helix 80	AI8	P	33	37	Right-handed 310
Helix 81	AI9	P	49	57	Right-handed alpha
Helix 82	AJ1	P	60	67	Right-handed alpha
Helix 83	AJ2	P	84	89	Right-handed alpha
Helix 84	AJ3	P	92	102	Right-handed alpha
Helix 85	AJ4	P	115	123	Right-handed alpha
Helix 86	AJ5	P	125	135	Right-handed alpha
Helix 87	AJ6	P	149	157	Right-handed alpha
Helix 88	AJ7	P	158	165	Right-handed alpha
Helix 89	AJ8	E	160	185	Right-handed alpha
Helix 90	AJ9	E	194	204	Right-handed alpha
Helix 91	AK1	E	234	240	Right-handed alpha
Helix 92	AK2	E	285	294	Right-handed alpha
Helix 93	AK3	E	297	303	Right-handed alpha
Helix 94	AK4	E	318	324	Right-handed alpha
Helix 95	AK5	E	337	350	Right-handed alpha
Helix 96	AK6	E	352	357	Right-handed alpha
Helix 97	AK7	E	406	421	Right-handed alpha
Helix 98	AK8	E	473	496	Right-handed alpha
Helix 99	AK9	E	503	506	Right-handed 310
Helix 100	AL1	E	507	519	Right-handed alpha
Helix 101	AL2	E	533	535	Right-handed 310
Helix 102	AL3	E	536	549	Right-handed alpha

There are 17 sheets in PDB entry 6BBN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	94	first strand
Strand 2	A	65	69	parallel
Strand 3	A	3	9	parallel
Strand 4	A	132	138	parallel
Strand 5	A	166	169	parallel
Strand 6	A	200	202	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	54	first strand
Strand 2	A	62	63	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	269	273	first strand
Strand 2	A	374	381	anti-parallel
Strand 3	A	312	320	anti-parallel
Strand 4	A	353	356	parallel

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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	92	94	first strand
Strand 2	B	65	69	parallel
Strand 3	B	3	9	parallel
Strand 4	B	132	140	parallel
Strand 5	B	165	171	parallel
Strand 6	B	200	204	parallel
Strand 7	B	267	273	parallel
Strand 8	B	374	381	anti-parallel
Strand 9	B	312	320	anti-parallel
Strand 10	B	351	356	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	56	first strand
Strand 2	B	60	63	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	92	94	first strand
Strand 2	C	65	69	parallel
Strand 3	C	3	9	parallel
Strand 4	C	132	138	parallel
Strand 5	C	165	172	parallel
Strand 6	C	200	205	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	54	first strand
Strand 2	C	62	63	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	269	272	first strand
Strand 2	C	373	379	anti-parallel
Strand 3	C	316	321	anti-parallel
Strand 4	C	352	356	parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	92	94	first strand
Strand 2	D	65	69	parallel
Strand 3	D	3	9	parallel
Strand 4	D	132	140	parallel
Strand 5	D	165	172	parallel
Strand 6	D	200	205	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	56	first strand
Strand 2	D	60	63	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	271	273	first strand
Strand 2	D	373	377	anti-parallel
Strand 3	D	312	321	anti-parallel
Strand 4	D	351	356	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	271	273	first strand
Strand 2	D	373	377	anti-parallel
Strand 3	D	312	321	anti-parallel
Strand 4	D	379	381	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	278	280	first strand
Strand 2	E	225	230	parallel
Strand 3	E	525	530	parallel
Strand 4	E	310	313	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	246	247	first strand
Strand 2	E	253	256	anti-parallel
Strand 3	E	273	275	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	258	261	first strand
Strand 2	E	267	270	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	306	307	first strand
Strand 2	E	449	457	parallel
Strand 3	E	436	444	anti-parallel
Strand 4	E	361	370	anti-parallel
Strand 5	E	373	376	anti-parallel
Strand 6	E	382	384	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	306	307	first strand
Strand 2	E	449	457	parallel
Strand 3	E	436	444	anti-parallel
Strand 4	E	361	370	anti-parallel
Strand 5	E	402	404	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6BBN

Analysis of interatomic Contacts of Structural Units in PDB entry:
6BBN