Analysis of interatomic Contacts of Structural Units in PDB entry:
6BBO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6BBO entry

There are 8 chains in PDB entry 6BBO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 3GLN 182
B
 U 0 A 7
C
 U 0 U 7
D
 ASN 4SER 222
E
 LEU 3GLN 182
F
 U 0 A 7
G
 U 0 U 7
H
 ASN 4SER 222
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 6BBO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 13Right-handed alpha
Helix 2
AA2
A
54 67Right-handed alpha
Helix 3
AA3
A
85 98Right-handed alpha
Helix 4
AA4
A
117 122Right-handed alpha
Helix 5
AA5
A
125 130Right-handed alpha
Helix 6
AA6
A
138 148Right-handed alpha
Helix 7
AA7
A
160 182Right-handed alpha
Helix 8
AA8
D
57 65Right-handed 310
Helix 9
AA9
D
81 86Right-handed alpha
Helix 10
AB1
E
5 13Right-handed alpha
Helix 11
AB2
E
54 67Right-handed alpha
Helix 12
AB3
E
85 98Right-handed alpha
Helix 13
AB4
E
117 122Right-handed alpha
Helix 14
AB5
E
125 130Right-handed alpha
Helix 15
AB6
E
137 148Right-handed alpha
Helix 16
AB7
E
160 182Right-handed alpha
Helix 17
AB8
H
57 65Right-handed 310
Helix 18
AB9
H
81 86Right-handed alpha
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There are 4 sheets in PDB entry 6BBO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 48first strand
Strand 2
A
29 34anti-parallel
Strand 3
A
74 82anti-parallel
Strand 4
A
102 110parallel
Strand 5
A
133 135parallel
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There are 13 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
140 143first strand
Strand 2
D
157 167anti-parallel
Strand 3
D
172 183anti-parallel
Strand 4
D
91 99anti-parallel
Strand 5
D
104 111anti-parallel
Strand 6
D
119 127anti-parallel
Strand 7
D
12 22parallel
Strand 8
D
25 36anti-parallel
Strand 9
D
41 50anti-parallel
Strand 10
D
210 221anti-parallel
Strand 11
D
193 204anti-parallel
Strand 12
D
146 150anti-parallel
Strand 13
D
157 167anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
43 48first strand
Strand 2
E
29 34anti-parallel
Strand 3
E
74 82anti-parallel
Strand 4
E
102 110parallel
Strand 5
E
133 135parallel
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There are 13 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
140 143first strand
Strand 2
H
157 167anti-parallel
Strand 3
H
172 183anti-parallel
Strand 4
H
91 99anti-parallel
Strand 5
H
104 111anti-parallel
Strand 6
H
119 127anti-parallel
Strand 7
H
12 22parallel
Strand 8
H
25 36anti-parallel
Strand 9
H
41 50anti-parallel
Strand 10
H
210 221anti-parallel
Strand 11
H
193 204anti-parallel
Strand 12
H
146 150anti-parallel
Strand 13
H
157 167anti-parallel
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