Analysis of interatomic Contacts of Structural Units in PDB entry:
6BBP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6BBP entry

There is 1 chain in PDB entry 6BBP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 53ASN 572
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 6BBP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
61 80Right-handed alpha
Helix 2
AA2
A
80 91Right-handed alpha
Helix 3
AA3
A
97 108Right-handed alpha
Helix 4
AA4
A
112 122Right-handed alpha
Helix 5
AA5
A
124 137Right-handed alpha
Helix 6
AA6
A
144 153Right-handed alpha
Helix 7
AA7
A
161 180Right-handed alpha
Helix 8
AA8
A
186 206Right-handed alpha
Helix 9
AA9
A
214 222Right-handed alpha
Helix 10
AB1
A
232 246Right-handed alpha
Helix 11
AB2
A
364 379Right-handed alpha
Helix 12
AB3
A
382 395Right-handed alpha
Helix 13
AB4
A
398 408Right-handed alpha
Helix 14
AB5
A
423 434Right-handed alpha
Helix 15
AB6
A
465 476Right-handed 310
Helix 16
AB7
A
490 492Right-handed 310
Helix 17
AB8
A
493 506Right-handed alpha
Helix 18
AB9
A
507 511Right-handed 310
Helix 19
AC1
A
529 537Right-handed alpha
Helix 20
AC2
A
559 571Right-handed alpha
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There are 2 sheets in PDB entry 6BBP. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
314 318first strand
Strand 2
A
326 330anti-parallel
Strand 3
A
358 361anti-parallel
Strand 4
A
267 274anti-parallel
Strand 5
A
281 289anti-parallel
Strand 6
A
292 296anti-parallel
Strand 7
A
306 309anti-parallel
Strand 8
A
342 344anti-parallel
Strand 9
A
350 352anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
445 452first strand
Strand 2
A
455 462anti-parallel
Strand 3
A
411 417parallel
Strand 4
A
481 487parallel
Strand 5
A
514 520parallel
Strand 6
A
547 551parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il