Analysis of interatomic Contacts of Structural Units in PDB entry:
6BCB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6BCB entry

There are 2 chains in PDB entry 6BCB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
F
 MET 1ALA 181
A
 ALA 299PRO 444
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 6BCB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
F
17 28Right-handed alpha
Helix 2
AA2
F
63 67Right-handed 310
Helix 3
AA3
F
69 73Right-handed 310
Helix 4
AA4
F
88 98Right-handed alpha
Helix 5
AA5
F
98 107Right-handed alpha
Helix 6
AA6
F
118 122Right-handed 310
Helix 7
AA7
F
124 134Right-handed alpha
Helix 8
AA8
F
140 151Right-handed alpha
Helix 9
AA9
F
166 180Right-handed alpha
Helix 10
AB1
A
303 315Right-handed alpha
Helix 11
AB2
A
331 335Right-handed alpha
Helix 12
AB3
A
425 442Right-handed alpha
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There are 4 sheets in PDB entry 6BCB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
39 48first strand
Strand 2
F
51 60anti-parallel
Strand 3
F
4 12parallel
Strand 4
F
79 85parallel
Strand 5
F
112 117parallel
Strand 6
F
155 158parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
320 322first strand
Strand 2
A
328 330anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
376 379first strand
Strand 2
A
366 373anti-parallel
Strand 3
A
388 390anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
376 379first strand
Strand 2
A
366 373anti-parallel
Strand 3
A
355 363anti-parallel
Strand 4
A
340 349anti-parallel
Strand 5
A
417 422anti-parallel
Strand 6
A
402 410anti-parallel
Strand 7
A
395 399anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il