Analysis of interatomic Contacts of Structural Units in PDB entry:
6BCG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6BCG entry

There are 12 chains in PDB entry 6BCG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	ASN 16	SER 314
E	G 1	T 26
F	C 1	C 26
A	ASN 16	SER 314
B	G 1	T 26
C	C 1	C 26
G	ASN 16	SER 314
H	G 1	T 26
I	C 1	C 26
J	ASN 16	SER 314
K	G 1	T 26
L	C 1	C 26

There are 63 helices in PDB entry 6BCG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	18	29	Right-handed alpha
Helix 2	AA2	D	57	59	Right-handed 310
Helix 3	AA3	D	60	72	Right-handed alpha
Helix 4	AA4	D	88	102	Right-handed alpha
Helix 5	AA5	D	107	124	Right-handed alpha
Helix 6	AA6	D	125	128	Right-handed 310
Helix 7	AA7	D	129	143	Right-handed alpha
Helix 8	AA8	D	148	155	Right-handed alpha
Helix 9	AA9	D	173	184	Right-handed alpha
Helix 10	AB1	D	215	227	Right-handed alpha
Helix 11	AB2	D	253	260	Right-handed alpha
Helix 12	AB3	D	260	268	Right-handed alpha
Helix 13	AB4	D	273	290	Right-handed alpha
Helix 14	AB5	D	295	308	Right-handed alpha
Helix 15	AB6	D	309	313	Right-handed 310
Helix 16	AB7	A	18	29	Right-handed alpha
Helix 17	AB8	A	57	59	Right-handed 310
Helix 18	AB9	A	60	72	Right-handed alpha
Helix 19	AC1	A	88	102	Right-handed alpha
Helix 20	AC2	A	112	124	Right-handed alpha
Helix 21	AC3	A	125	128	Right-handed 310
Helix 22	AC4	A	129	143	Right-handed alpha
Helix 23	AC5	A	148	155	Right-handed alpha
Helix 24	AC6	A	173	184	Right-handed alpha
Helix 25	AC7	A	215	227	Right-handed alpha
Helix 26	AC8	A	253	260	Right-handed alpha
Helix 27	AC9	A	260	268	Right-handed alpha
Helix 28	AD1	A	273	290	Right-handed alpha
Helix 29	AD2	A	291	294	Right-handed 310
Helix 30	AD3	A	295	308	Right-handed alpha
Helix 31	AD4	A	309	313	Right-handed 310
Helix 32	AD5	G	18	29	Right-handed alpha
Helix 33	AD6	G	57	59	Right-handed 310
Helix 34	AD7	G	60	72	Right-handed alpha
Helix 35	AD8	G	88	102	Right-handed alpha
Helix 36	AD9	G	107	124	Right-handed alpha
Helix 37	AE1	G	125	128	Right-handed 310
Helix 38	AE2	G	129	143	Right-handed alpha
Helix 39	AE3	G	148	155	Right-handed alpha
Helix 40	AE4	G	173	184	Right-handed alpha
Helix 41	AE5	G	215	227	Right-handed alpha
Helix 42	AE6	G	253	260	Right-handed alpha
Helix 43	AE7	G	260	268	Right-handed alpha
Helix 44	AE8	G	273	290	Right-handed alpha
Helix 45	AE9	G	291	294	Right-handed 310
Helix 46	AF1	G	295	308	Right-handed alpha
Helix 47	AF2	G	309	313	Right-handed 310
Helix 48	AF3	J	18	29	Right-handed alpha
Helix 49	AF4	J	57	59	Right-handed 310
Helix 50	AF5	J	60	72	Right-handed alpha
Helix 51	AF6	J	88	102	Right-handed alpha
Helix 52	AF7	J	107	124	Right-handed alpha
Helix 53	AF8	J	125	128	Right-handed 310
Helix 54	AF9	J	129	143	Right-handed alpha
Helix 55	AG1	J	148	155	Right-handed alpha
Helix 56	AG2	J	173	184	Right-handed alpha
Helix 57	AG3	J	215	227	Right-handed alpha
Helix 58	AG4	J	253	260	Right-handed alpha
Helix 59	AG5	J	260	268	Right-handed alpha
Helix 60	AG6	J	273	290	Right-handed alpha
Helix 61	AG7	J	291	294	Right-handed 310
Helix 62	AG8	J	295	308	Right-handed alpha
Helix 63	AG9	J	309	313	Right-handed 310

There are 8 sheets in PDB entry 6BCG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	30	38	first strand
Strand 2	D	46	56	anti-parallel
Strand 3	D	82	86	anti-parallel
Strand 4	D	75	78	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	185	193	first strand
Strand 2	D	201	212	anti-parallel
Strand 3	D	246	251	anti-parallel
Strand 4	D	230	233	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	38	first strand
Strand 2	A	46	56	anti-parallel
Strand 3	A	82	86	anti-parallel
Strand 4	A	75	78	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	185	193	first strand
Strand 2	A	201	212	anti-parallel
Strand 3	A	246	251	anti-parallel
Strand 4	A	230	233	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	30	38	first strand
Strand 2	G	46	56	anti-parallel
Strand 3	G	82	86	anti-parallel
Strand 4	G	75	78	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	185	193	first strand
Strand 2	G	201	212	anti-parallel
Strand 3	G	246	251	anti-parallel
Strand 4	G	230	233	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	30	38	first strand
Strand 2	J	46	56	anti-parallel
Strand 3	J	82	86	anti-parallel
Strand 4	J	75	78	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	185	193	first strand
Strand 2	J	201	212	anti-parallel
Strand 3	J	246	251	anti-parallel
Strand 4	J	230	233	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6BCG

Analysis of interatomic Contacts of Structural Units in PDB entry:
6BCG