Analysis of interatomic Contacts of Structural Units in PDB entry:
6BD4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6BD4 entry

There is 1 chain in PDB entry 6BD4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 181ASN 513
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 6BD4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
212 244Right-handed alpha
Helix 2
AA2
A
245 248Right-handed 310
Helix 3
AA3
A
249 251Right-handed 310
Helix 4
AA4
A
252 276Right-handed alpha
Helix 5
AA5
A
276 281Right-handed alpha
Helix 6
AA6
A
299 331Right-handed alpha
Helix 7
AA7
A
336 342Right-handed alpha
Helix 8
AA8
A
343 366Right-handed alpha
Helix 9
AA9
A
383 391Right-handed alpha
Helix 10
AB1
A
391 418Right-handed alpha
Helix 11
AB2
A
1029 1033Right-handed 310
Helix 12
AB3
A
1045 1047Right-handed 310
Helix 13
AB4
A
431 444Right-handed alpha
Helix 14
AB5
A
444 461Right-handed alpha
Helix 15
AB6
A
461 468Right-handed alpha
Helix 16
AB7
A
473 490Right-handed alpha
Helix 17
AB8
A
491 496Right-handed 310
Helix 18
AB9
A
497 512Right-handed alpha
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There are 4 sheets in PDB entry 6BD4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 195first strand
Strand 2
A
200 201anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
282 283first strand
Strand 2
A
291 292anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
368 370first strand
Strand 2
A
377 379anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1012 1013first strand
Strand 2
A
1004 1006anti-parallel
Strand 3
A
1049 1051anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il