Analysis of interatomic Contacts of Structural Units in PDB entry:
6BD9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6BD9 entry

There are 2 chains in PDB entry 6BD9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 83LYS 648
B
 PRO 83ASP 646
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 63 helices in PDB entry 6BD9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
93 105Right-handed alpha
Helix 2
AA2
A
115 117Right-handed 310
Helix 3
AA3
A
118 128Right-handed alpha
Helix 4
AA4
A
138 154Right-handed alpha
Helix 5
AA5
A
164 169Right-handed alpha
Helix 6
AA6
A
170 181Right-handed alpha
Helix 7
AA7
A
192 196Right-handed 310
Helix 8
AA8
A
205 210Right-handed alpha
Helix 9
AA9
A
211 214Right-handed 310
Helix 10
AB1
A
222 224Right-handed 310
Helix 11
AB2
A
225 238Right-handed alpha
Helix 12
AB3
A
251 256Right-handed alpha
Helix 13
AB4
A
265 268Right-handed 310
Helix 14
AB5
A
281 299Right-handed alpha
Helix 15
AB6
A
308 313Right-handed 310
Helix 16
AB7
A
315 328Right-handed alpha
Helix 17
AB8
A
335 338Right-handed 310
Helix 18
AB9
A
357 367Right-handed alpha
Helix 19
AC1
A
378 383Right-handed alpha
Helix 20
AC2
A
384 388Right-handed 310
Helix 21
AC3
A
389 398Right-handed alpha
Helix 22
AC4
A
409 413Right-handed 310
Helix 23
AC5
A
426 436Right-handed alpha
Helix 24
AC6
A
444 458Right-handed alpha
Helix 25
AC7
A
472 487Right-handed alpha
Helix 26
AC8
A
498 508Right-handed alpha
Helix 27
AC9
A
527 539Right-handed alpha
Helix 28
AD1
A
550 557Right-handed alpha
Helix 29
AD2
A
559 567Right-handed alpha
Helix 30
AD3
A
604 613Right-handed alpha
Helix 31
AD4
A
621 623Right-handed 310
Helix 32
AD5
A
624 635Right-handed alpha
Helix 33
AD6
B
93 105Right-handed alpha
Helix 34
AD7
B
115 117Right-handed 310
Helix 35
AD8
B
118 127Right-handed alpha
Helix 36
AD9
B
138 154Right-handed alpha
Helix 37
AE1
B
164 169Right-handed alpha
Helix 38
AE2
B
170 181Right-handed alpha
Helix 39
AE3
B
192 196Right-handed 310
Helix 40
AE4
B
205 210Right-handed alpha
Helix 41
AE5
B
211 214Right-handed 310
Helix 42
AE6
B
222 224Right-handed 310
Helix 43
AE7
B
225 239Right-handed alpha
Helix 44
AE8
B
251 256Right-handed alpha
Helix 45
AE9
B
265 267Right-handed 310
Helix 46
AF1
B
278 298Right-handed alpha
Helix 47
AF2
B
308 313Right-handed 310
Helix 48
AF3
B
315 327Right-handed alpha
Helix 49
AF4
B
335 338Right-handed 310
Helix 50
AF5
B
357 364Right-handed alpha
Helix 51
AF6
B
378 383Right-handed alpha
Helix 52
AF7
B
391 396Right-handed alpha
Helix 53
AF8
B
409 413Right-handed 310
Helix 54
AF9
B
426 435Right-handed alpha
Helix 55
AG1
B
444 458Right-handed alpha
Helix 56
AG2
B
472 487Right-handed alpha
Helix 57
AG3
B
498 508Right-handed alpha
Helix 58
AG4
B
527 539Right-handed alpha
Helix 59
AG5
B
550 557Right-handed alpha
Helix 60
AG6
B
559 567Right-handed alpha
Helix 61
AG7
B
604 612Right-handed alpha
Helix 62
AG8
B
621 623Right-handed 310
Helix 63
AG9
B
624 635Right-handed alpha
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There are 9 sheets in PDB entry 6BD9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 86first strand
Strand 2
A
262 263anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 134first strand
Strand 2
A
109 112parallel
Strand 3
A
157 161parallel
Strand 4
A
184 190parallel
Strand 5
A
244 250parallel
Strand 6
A
216 219parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
348 351first strand
Strand 2
A
331 333parallel
Strand 3
A
302 306parallel
Strand 4
A
369 373parallel
Strand 5
A
402 407parallel
Strand 6
A
421 424parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
516 517first strand
Strand 2
A
491 495parallel
Strand 3
A
543 549parallel
Strand 4
A
571 576parallel
Strand 5
A
639 644parallel
Strand 6
A
615 619parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
85 86first strand
Strand 2
B
262 263anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
132 134first strand
Strand 2
B
109 112parallel
Strand 3
B
157 161parallel
Strand 4
B
184 190parallel
Strand 5
B
244 250parallel
Strand 6
B
216 219parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
348 351first strand
Strand 2
B
331 333parallel
Strand 3
B
302 306parallel
Strand 4
B
369 373parallel
Strand 5
B
402 407parallel
Strand 6
B
421 424parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
516 517first strand
Strand 2
B
491 495parallel
Strand 3
B
543 549parallel
Strand 4
B
571 576parallel
Strand 5
B
639 644parallel
Strand 6
B
615 619parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
583 587first strand
Strand 2
B
594 597anti-parallel
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