Analysis of interatomic Contacts of Structural Units in PDB entry:
6BDL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6BDL entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 4 chains in PDB entry 6BDL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 337TRP 516
A
 PHE 518PHE 671
B
 GLU 337TRP 516
B
 PHE 518PHE 671
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 6BDL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
337 354Right-handed alpha
Helix 2
AA2
A
355 358Right-handed 310
Helix 3
AA3
A
394 400Right-handed alpha
Helix 4
AA4
A
402 416Right-handed alpha
Helix 5
AA5
A
446 454Right-handed alpha
Helix 6
AA6
A
457 478Right-handed alpha
Helix 7
AA7
A
486 488Right-handed 310
Helix 8
AA8
A
521 525Right-handed 310
Helix 9
AA9
A
526 531Right-handed alpha
Helix 10
AB1
A
537 554Right-handed alpha
Helix 11
AB2
A
562 573Right-handed alpha
Helix 12
AB3
A
574 577Right-handed 310
Helix 13
AB4
A
584 595Right-handed alpha
Helix 14
AB5
A
598 602Right-handed 310
Helix 15
AB6
A
609 615Right-handed alpha
Helix 16
AB7
A
616 620Right-handed 310
Helix 17
AB8
A
623 629Right-handed alpha
Helix 18
AB9
B
338 354Right-handed alpha
Helix 19
AC1
B
355 358Right-handed 310
Helix 20
AC2
B
394 400Right-handed alpha
Helix 21
AC3
B
402 416Right-handed alpha
Helix 22
AC4
B
446 454Right-handed alpha
Helix 23
AC5
B
457 478Right-handed alpha
Helix 24
AC6
B
486 488Right-handed 310
Helix 25
AC7
B
521 525Right-handed 310
Helix 26
AC8
B
526 531Right-handed alpha
Helix 27
AC9
B
537 554Right-handed alpha
Helix 28
AD1
B
562 573Right-handed alpha
Helix 29
AD2
B
574 577Right-handed 310
Helix 30
AD3
B
584 595Right-handed alpha
Helix 31
AD4
B
598 602Right-handed 310
Helix 32
AD5
B
609 615Right-handed alpha
Helix 33
AD6
B
616 620Right-handed 310
Helix 34
AD7
B
623 629Right-handed alpha
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There are 6 sheets in PDB entry 6BDL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
360 368first strand
Strand 2
A
372 379anti-parallel
Strand 3
A
386 393anti-parallel
Strand 4
A
433 439anti-parallel
Strand 5
A
424 429anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
444 445first strand
Strand 2
A
490 492anti-parallel
Strand 3
A
498 500anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
480 481first strand
Strand 2
A
507 508anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
360 368first strand
Strand 2
B
372 379anti-parallel
Strand 3
B
386 393anti-parallel
Strand 4
B
433 439anti-parallel
Strand 5
B
424 429anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
444 445first strand
Strand 2
B
490 492anti-parallel
Strand 3
B
498 500anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
480 481first strand
Strand 2
B
507 508anti-parallel
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