Analysis of interatomic Contacts of Structural Units in PDB entry:
6BDN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6BDN entry

There is 1 chain in PDB entry 6BDN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 8GLN 314
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 6BDN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 13Right-handed alpha
Helix 2
AA2
A
19 23Right-handed alpha
Helix 3
AA3
A
58 60Right-handed 310
Helix 4
AA4
A
61 78Right-handed alpha
Helix 5
AA5
A
108 116Right-handed alpha
Helix 6
AA6
A
120 141Right-handed alpha
Helix 7
AA7
A
149 151Right-handed 310
Helix 8
AA8
A
181 185Right-handed 310
Helix 9
AA9
A
186 193Right-handed alpha
Helix 10
AB1
A
200 217Right-handed alpha
Helix 11
AB2
A
225 236Right-handed alpha
Helix 12
AB3
A
247 258Right-handed alpha
Helix 13
AB4
A
261 265Right-handed 310
Helix 14
AB5
A
267 272Right-handed alpha
Helix 15
AB6
A
274 279Right-handed alpha
Helix 16
AB7
A
284 299Right-handed alpha
Helix 17
AB8
A
301 309Right-handed alpha
Helix 18
AB9
A
310 313Right-handed 310
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There are 2 sheets in PDB entry 6BDN. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 33first strand
Strand 2
A
36 43anti-parallel
Strand 3
A
49 56anti-parallel
Strand 4
A
96 102anti-parallel
Strand 5
A
87 93anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 107first strand
Strand 2
A
153 155anti-parallel
Strand 3
A
161 163anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il