Analysis of interatomic Contacts of Structural Units in PDB entry:
6BE1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6BE1 entry

There are 4 chains in PDB entry 6BE1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 6	SER 462
B	ASP 6	SER 462
C	ASP 6	SER 462
D	ASP 6	PRO 29

There are 45 helices in PDB entry 6BE1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	19	Right-handed alpha
Helix 2	AA2	A	91	93	Right-handed 310
Helix 3	AA3	A	170	176	Right-handed alpha
Helix 4	AA4	A	221	241	Right-handed alpha
Helix 5	AA5	A	250	270	Right-handed alpha
Helix 6	AA6	A	282	308	Right-handed alpha
Helix 7	AA7	A	323	328	Right-handed alpha
Helix 8	AA8	A	399	457	Right-handed alpha
Helix 9	AA9	B	12	20	Right-handed alpha
Helix 10	AB1	B	91	93	Right-handed 310
Helix 11	AB2	B	170	176	Right-handed alpha
Helix 12	AB3	B	221	242	Right-handed alpha
Helix 13	AB4	B	250	269	Right-handed alpha
Helix 14	AB5	B	282	308	Right-handed alpha
Helix 15	AB6	B	323	331	Right-handed alpha
Helix 16	AB7	B	406	462	Right-handed alpha
Helix 17	AB8	C	12	20	Right-handed alpha
Helix 18	AB9	C	91	93	Right-handed 310
Helix 19	AC1	C	170	176	Right-handed alpha
Helix 20	AC2	C	222	227	Right-handed alpha
Helix 21	AC3	C	228	241	Right-handed alpha
Helix 22	AC4	C	250	269	Right-handed alpha
Helix 23	AC5	C	282	308	Right-handed alpha
Helix 24	AC6	C	317	325	Right-handed alpha
Helix 25	AC7	C	398	405	Right-handed alpha
Helix 26	AC8	C	406	461	Right-handed alpha
Helix 27	AC9	D	12	19	Right-handed alpha
Helix 28	AD1	D	89	93	Right-handed 310
Helix 29	AD2	D	170	176	Right-handed alpha
Helix 30	AD3	D	223	242	Right-handed alpha
Helix 31	AD4	D	250	271	Right-handed alpha
Helix 32	AD5	D	281	283	Right-handed 310
Helix 33	AD6	D	284	308	Right-handed alpha
Helix 34	AD7	D	318	326	Right-handed alpha
Helix 35	AD8	D	327	333	Right-handed alpha
Helix 36	AD9	D	402	458	Right-handed alpha
Helix 37	AE1	E	12	20	Right-handed alpha
Helix 38	AE2	E	91	93	Right-handed 310
Helix 39	AE3	E	170	176	Right-handed alpha
Helix 40	AE4	E	221	228	Right-handed alpha
Helix 41	AE5	E	228	241	Right-handed alpha
Helix 42	AE6	E	249	269	Right-handed alpha
Helix 43	AE7	E	282	308	Right-handed alpha
Helix 44	AE8	E	317	321	Right-handed 310
Helix 45	AE9	E	403	457	Right-handed alpha

There are 25 sheets in PDB entry 6BE1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	127	129	first strand
Strand 2	A	58	67	anti-parallel
Strand 3	A	132	133	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	127	129	first strand
Strand 2	A	58	67	anti-parallel
Strand 3	A	37	51	anti-parallel
Strand 4	A	163	167	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	89	first strand
Strand 2	A	114	115	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	100	first strand
Strand 2	A	152	155	anti-parallel
Strand 3	A	209	218	anti-parallel
Strand 4	A	147	149	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	100	first strand
Strand 2	A	152	155	anti-parallel
Strand 3	A	209	218	anti-parallel
Strand 4	A	187	196	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	199	202	first strand
Strand 2	A	205	207	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	105	first strand
Strand 2	B	132	133	anti-parallel
Strand 3	B	57	69	anti-parallel
Strand 4	B	122	126	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	105	first strand
Strand 2	B	132	133	anti-parallel
Strand 3	B	57	69	anti-parallel
Strand 4	B	37	52	anti-parallel
Strand 5	B	163	167	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	88	89	first strand
Strand 2	B	114	115	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	99	100	first strand
Strand 2	B	153	154	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	196	first strand
Strand 2	B	210	218	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	199	202	first strand
Strand 2	B	205	207	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	122	125	first strand
Strand 2	C	57	69	anti-parallel
Strand 3	C	129	134	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	122	125	first strand
Strand 2	C	57	69	anti-parallel
Strand 3	C	37	52	anti-parallel
Strand 4	C	163	167	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	88	89	first strand
Strand 2	C	114	115	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	100	first strand
Strand 2	C	153	155	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	149	150	first strand
Strand 2	C	210	218	anti-parallel
Strand 3	C	187	196	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	199	202	first strand
Strand 2	C	205	207	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	116	117	first strand
Strand 2	D	123	126	anti-parallel
Strand 3	D	58	67	anti-parallel
Strand 4	D	129	133	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	116	117	first strand
Strand 2	D	123	126	anti-parallel
Strand 3	D	58	67	anti-parallel
Strand 4	D	37	51	anti-parallel
Strand 5	D	163	165	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	147	148	first strand
Strand 2	D	215	216	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	151	154	first strand
Strand 2	D	205	212	anti-parallel
Strand 3	D	194	202	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	86	89	first strand
Strand 2	E	114	117	anti-parallel
Strand 3	E	123	133	anti-parallel
Strand 4	E	57	67	anti-parallel
Strand 5	E	37	52	anti-parallel
Strand 6	E	163	166	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	187	196	first strand
Strand 2	E	210	218	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	199	202	first strand
Strand 2	E	205	207	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6BE1

Analysis of interatomic Contacts of Structural Units in PDB entry:
6BE1