Analysis of interatomic Contacts of Structural Units in PDB entry:
6BEB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6BEB entry

There are 3 chains in PDB entry 6BEB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	MET 547
B	SER 15	MET 547
C	PRO -10	MET 547

There are 39 helices in PDB entry 6BEB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	89	94	Right-handed alpha
Helix 2	AA2	A	112	120	Right-handed alpha
Helix 3	AA3	A	122	129	Right-handed alpha
Helix 4	AA4	A	132	137	Right-handed alpha
Helix 5	AA5	A	160	164	Right-handed 310
Helix 6	AA6	A	186	189	Right-handed 310
Helix 7	AA7	A	198	206	Right-handed alpha
Helix 8	AA8	A	279	295	Right-handed alpha
Helix 9	AA9	A	389	394	Right-handed alpha
Helix 10	AB1	A	396	401	Right-handed alpha
Helix 11	AB2	A	413	419	Right-handed alpha
Helix 12	AB3	A	458	469	Right-handed alpha
Helix 13	AB4	A	516	521	Right-handed 310
Helix 14	AB5	B	89	94	Right-handed alpha
Helix 15	AB6	B	112	120	Right-handed alpha
Helix 16	AB7	B	122	129	Right-handed alpha
Helix 17	AB8	B	132	137	Right-handed alpha
Helix 18	AB9	B	160	164	Right-handed 310
Helix 19	AC1	B	186	189	Right-handed 310
Helix 20	AC2	B	198	206	Right-handed alpha
Helix 21	AC3	B	279	295	Right-handed alpha
Helix 22	AC4	B	389	394	Right-handed alpha
Helix 23	AC5	B	396	401	Right-handed alpha
Helix 24	AC6	B	413	419	Right-handed alpha
Helix 25	AC7	B	458	469	Right-handed alpha
Helix 26	AC8	B	516	521	Right-handed 310
Helix 27	AC9	C	89	94	Right-handed alpha
Helix 28	AD1	C	112	120	Right-handed alpha
Helix 29	AD2	C	122	129	Right-handed alpha
Helix 30	AD3	C	132	137	Right-handed alpha
Helix 31	AD4	C	160	164	Right-handed 310
Helix 32	AD5	C	186	189	Right-handed 310
Helix 33	AD6	C	198	206	Right-handed alpha
Helix 34	AD7	C	279	295	Right-handed alpha
Helix 35	AD8	C	389	394	Right-handed alpha
Helix 36	AD9	C	396	401	Right-handed alpha
Helix 37	AE1	C	413	419	Right-handed alpha
Helix 38	AE2	C	458	469	Right-handed alpha
Helix 39	AE3	C	516	521	Right-handed 310

There are 33 sheets in PDB entry 6BEB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	40	first strand
Strand 2	A	210	219	anti-parallel
Strand 3	A	65	75	anti-parallel
Strand 4	A	152	158	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	40	first strand
Strand 2	A	210	219	anti-parallel
Strand 3	A	65	75	anti-parallel
Strand 4	A	171	172	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	44	first strand
Strand 2	A	53	58	anti-parallel
Strand 3	A	178	184	anti-parallel
Strand 4	A	95	102	anti-parallel
Strand 5	A	105	111	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	78	79	first strand
Strand 2	A	147	149	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	139	141	first strand
Strand 2	A	82	86	anti-parallel
Strand 3	A	191	193	anti-parallel
Strand 4	A	421	423	anti-parallel
Strand 5	A	269	270	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	227	236	first strand
Strand 2	A	522	536	anti-parallel
Strand 3	A	251	262	anti-parallel
Strand 4	A	492	493	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	475	478	first strand
Strand 2	A	251	262	anti-parallel
Strand 3	A	522	536	anti-parallel
Strand 4	A	542	545	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	243	246	first strand
Strand 2	A	503	509	anti-parallel
Strand 3	A	440	447	anti-parallel
Strand 4	A	450	455	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	296	299	first strand
Strand 2	A	340	344	anti-parallel
Strand 3	A	312	314	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	320	323	first strand
Strand 2	A	326	333	anti-parallel
Strand 3	A	365	373	parallel
Strand 4	A	378	386	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	349	350	first strand
Strand 2	A	359	360	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	40	first strand
Strand 2	B	210	219	anti-parallel
Strand 3	B	65	75	anti-parallel
Strand 4	B	152	158	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	40	first strand
Strand 2	B	210	219	anti-parallel
Strand 3	B	65	75	anti-parallel
Strand 4	B	171	172	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	42	44	first strand
Strand 2	B	53	58	anti-parallel
Strand 3	B	178	184	anti-parallel
Strand 4	B	95	102	anti-parallel
Strand 5	B	105	111	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	78	79	first strand
Strand 2	B	147	149	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	139	141	first strand
Strand 2	B	82	86	anti-parallel
Strand 3	B	191	193	anti-parallel
Strand 4	B	421	423	anti-parallel
Strand 5	B	269	270	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	227	236	first strand
Strand 2	B	522	535	anti-parallel
Strand 3	B	251	262	anti-parallel
Strand 4	B	475	478	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	227	236	first strand
Strand 2	B	522	535	anti-parallel
Strand 3	B	251	262	anti-parallel
Strand 4	B	492	493	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	243	246	first strand
Strand 2	B	503	509	anti-parallel
Strand 3	B	440	447	anti-parallel
Strand 4	B	450	455	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	296	299	first strand
Strand 2	B	340	344	anti-parallel
Strand 3	B	312	314	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	320	323	first strand
Strand 2	B	326	333	anti-parallel
Strand 3	B	365	373	parallel
Strand 4	B	378	386	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	349	350	first strand
Strand 2	B	359	360	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	32	40	first strand
Strand 2	C	210	219	anti-parallel
Strand 3	C	65	75	anti-parallel
Strand 4	C	152	158	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	32	40	first strand
Strand 2	C	210	219	anti-parallel
Strand 3	C	65	75	anti-parallel
Strand 4	C	171	172	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	44	first strand
Strand 2	C	53	58	anti-parallel
Strand 3	C	178	184	anti-parallel
Strand 4	C	95	102	anti-parallel
Strand 5	C	105	111	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	78	79	first strand
Strand 2	C	147	149	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	139	141	first strand
Strand 2	C	82	86	anti-parallel
Strand 3	C	191	193	anti-parallel
Strand 4	C	421	423	anti-parallel
Strand 5	C	269	270	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	227	236	first strand
Strand 2	C	522	536	anti-parallel
Strand 3	C	251	262	anti-parallel
Strand 4	C	492	493	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	475	478	first strand
Strand 2	C	251	262	anti-parallel
Strand 3	C	522	536	anti-parallel
Strand 4	C	542	545	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	243	246	first strand
Strand 2	C	503	509	anti-parallel
Strand 3	C	440	447	anti-parallel
Strand 4	C	450	455	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	296	299	first strand
Strand 2	C	340	344	anti-parallel
Strand 3	C	312	314	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	320	323	first strand
Strand 2	C	326	333	anti-parallel
Strand 3	C	365	373	parallel
Strand 4	C	378	386	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	349	350	first strand
Strand 2	C	359	360	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6BEB

Analysis of interatomic Contacts of Structural Units in PDB entry:
6BEB