Analysis of interatomic Contacts of Structural Units in PDB entry:
6BF7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6BF7 entry

There are 6 chains in PDB entry 6BF7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 46	HIS 1011
B	ALA 46	HIS 1011
C	GLU 4	PRO 221
D	ASP 2	ARG 212
E	GLU 4	PRO 221
F	ASP 2	ARG 212

There are 80 helices in PDB entry 6BF7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	105	114	Right-handed alpha
Helix 2	AA2	A	125	134	Right-handed alpha
Helix 3	AA3	A	157	171	Right-handed alpha
Helix 4	AA4	A	175	193	Right-handed alpha
Helix 5	AA5	A	196	208	Right-handed alpha
Helix 6	AA6	A	213	217	Right-handed 310
Helix 7	AA7	A	222	228	Right-handed alpha
Helix 8	AA8	A	228	233	Right-handed alpha
Helix 9	AA9	A	236	249	Right-handed alpha
Helix 10	AB1	A	265	275	Right-handed alpha
Helix 11	AB2	A	329	339	Right-handed alpha
Helix 12	AB3	A	345	353	Right-handed alpha
Helix 13	AB4	A	380	386	Right-handed alpha
Helix 14	AB5	A	386	405	Right-handed alpha
Helix 15	AB6	A	408	424	Right-handed alpha
Helix 16	AB7	A	429	440	Right-handed alpha
Helix 17	AB8	A	460	471	Right-handed alpha
Helix 18	AB9	A	506	516	Right-handed alpha
Helix 19	AC1	A	581	584	Right-handed 310
Helix 20	AC2	A	586	604	Right-handed alpha
Helix 21	AC3	A	604	615	Right-handed alpha
Helix 22	AC4	A	637	651	Right-handed alpha
Helix 23	AC5	A	655	673	Right-handed alpha
Helix 24	AC6	A	674	676	Right-handed 310
Helix 25	AC7	A	677	690	Right-handed alpha
Helix 26	AC8	A	696	703	Right-handed alpha
Helix 27	AC9	A	704	707	Right-handed 310
Helix 28	AD1	A	708	720	Right-handed alpha
Helix 29	AD2	A	734	754	Right-handed alpha
Helix 30	AD3	A	801	815	Right-handed alpha
Helix 31	AD4	A	815	823	Right-handed alpha
Helix 32	AD5	A	855	876	Right-handed alpha
Helix 33	AD6	A	878	894	Right-handed alpha
Helix 34	AD7	A	899	914	Right-handed alpha
Helix 35	AD8	A	919	929	Right-handed alpha
Helix 36	AD9	A	932	944	Right-handed alpha
Helix 37	AE1	A	994	999	Right-handed alpha
Helix 38	AE2	A	1000	1002	Right-handed 310
Helix 39	AE3	B	95	99	Right-handed 310
Helix 40	AE4	B	105	114	Right-handed alpha
Helix 41	AE5	B	125	134	Right-handed alpha
Helix 42	AE6	B	157	167	Right-handed alpha
Helix 43	AE7	B	175	193	Right-handed alpha
Helix 44	AE8	B	196	208	Right-handed alpha
Helix 45	AE9	B	213	217	Right-handed 310
Helix 46	AF1	B	222	228	Right-handed alpha
Helix 47	AF2	B	228	233	Right-handed alpha
Helix 48	AF3	B	236	248	Right-handed alpha
Helix 49	AF4	B	265	275	Right-handed alpha
Helix 50	AF5	B	329	339	Right-handed alpha
Helix 51	AF6	B	345	354	Right-handed alpha
Helix 52	AF7	B	386	405	Right-handed alpha
Helix 53	AF8	B	408	424	Right-handed alpha
Helix 54	AF9	B	432	440	Right-handed alpha
Helix 55	AG1	B	460	471	Right-handed alpha
Helix 56	AG2	B	472	476	Right-handed 310
Helix 57	AG3	B	506	516	Right-handed alpha
Helix 58	AG4	B	581	584	Right-handed 310
Helix 59	AG5	B	586	614	Right-handed alpha
Helix 60	AG6	B	637	651	Right-handed alpha
Helix 61	AG7	B	655	673	Right-handed alpha
Helix 62	AG8	B	677	690	Right-handed alpha
Helix 63	AG9	B	696	703	Right-handed alpha
Helix 64	AH1	B	704	706	Right-handed 310
Helix 65	AH2	B	708	720	Right-handed alpha
Helix 66	AH3	B	734	754	Right-handed alpha
Helix 67	AH4	B	801	815	Right-handed alpha
Helix 68	AH5	B	815	823	Right-handed alpha
Helix 69	AH6	B	855	876	Right-handed alpha
Helix 70	AH7	B	878	894	Right-handed alpha
Helix 71	AH8	B	899	912	Right-handed alpha
Helix 72	AH9	B	919	929	Right-handed alpha
Helix 73	AI1	B	932	942	Right-handed alpha
Helix 74	AI2	B	994	1001	Right-handed alpha
Helix 75	AI3	C	90	94	Right-handed 310
Helix 76	AI4	D	122	127	Right-handed alpha
Helix 77	AI5	D	183	187	Right-handed 310
Helix 78	AI6	E	90	94	Right-handed 310
Helix 79	AI7	E	135	139	Right-handed 310
Helix 80	AI8	F	122	127	Right-handed alpha

There are 28 sheets in PDB entry 6BF7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	63	69	first strand
Strand 2	A	73	79	anti-parallel
Strand 3	A	254	260	parallel
Strand 4	A	87	92	anti-parallel
Strand 5	A	147	152	anti-parallel
Strand 6	A	139	142	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	303	304	first strand
Strand 2	A	477	481	parallel
Strand 3	A	312	320	anti-parallel
Strand 4	A	370	378	anti-parallel
Strand 5	A	359	364	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	491	492	first strand
Strand 2	A	499	500	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	549	553	first strand
Strand 2	A	557	562	anti-parallel
Strand 3	A	724	731	parallel
Strand 4	A	571	579	anti-parallel
Strand 5	A	626	634	anti-parallel
Strand 6	A	617	622	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	776	777	first strand
Strand 2	A	953	959	parallel
Strand 3	A	780	782	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	776	777	first strand
Strand 2	A	953	959	parallel
Strand 3	A	789	795	anti-parallel
Strand 4	A	846	852	anti-parallel
Strand 5	A	832	837	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	69	first strand
Strand 2	B	73	79	anti-parallel
Strand 3	B	254	260	parallel
Strand 4	B	86	92	anti-parallel
Strand 5	B	147	153	anti-parallel
Strand 6	B	139	142	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	303	304	first strand
Strand 2	B	479	481	parallel
Strand 3	B	312	319	anti-parallel
Strand 4	B	371	378	anti-parallel
Strand 5	B	359	364	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	491	492	first strand
Strand 2	B	499	500	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	549	553	first strand
Strand 2	B	558	562	anti-parallel
Strand 3	B	724	731	parallel
Strand 4	B	572	579	anti-parallel
Strand 5	B	626	633	anti-parallel
Strand 6	B	617	622	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	832	837	first strand
Strand 2	B	843	852	anti-parallel
Strand 3	B	789	799	anti-parallel
Strand 4	B	953	958	anti-parallel
Strand 5	B	776	778	parallel
Strand 6	B	990	991	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	6	10	first strand
Strand 2	C	20	28	anti-parallel
Strand 3	C	81	87	anti-parallel
Strand 4	C	72	76	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	14	15	first strand
Strand 2	C	116	120	parallel
Strand 3	C	95	101	anti-parallel
Strand 4	C	37	41	anti-parallel
Strand 5	C	49	54	anti-parallel
Strand 6	C	61	63	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	131	first strand
Strand 2	C	143	153	anti-parallel
Strand 3	C	184	193	anti-parallel
Strand 4	C	171	173	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	158	162	first strand
Strand 2	C	203	208	anti-parallel
Strand 3	C	217	218	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	8	first strand
Strand 2	D	20	26	anti-parallel
Strand 3	D	71	76	anti-parallel
Strand 4	D	63	68	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	13	first strand
Strand 2	D	103	106	parallel
Strand 3	D	86	91	anti-parallel
Strand 4	D	34	39	anti-parallel
Strand 5	D	46	50	anti-parallel
Strand 6	D	54	55	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	115	119	first strand
Strand 2	D	134	140	anti-parallel
Strand 3	D	174	179	anti-parallel
Strand 4	D	162	164	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	155	156	first strand
Strand 2	D	145	151	anti-parallel
Strand 3	D	192	199	anti-parallel
Strand 4	D	206	211	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	6	8	first strand
Strand 2	E	20	28	anti-parallel
Strand 3	E	81	87	anti-parallel
Strand 4	E	71	76	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	14	15	first strand
Strand 2	E	119	120	parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	61	62	first strand
Strand 2	E	48	54	anti-parallel
Strand 3	E	37	42	anti-parallel
Strand 4	E	96	101	anti-parallel
Strand 5	E	116	117	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	128	131	first strand
Strand 2	E	143	153	anti-parallel
Strand 3	E	184	193	anti-parallel
Strand 4	E	171	173	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	159	162	first strand
Strand 2	E	203	207	anti-parallel
Strand 3	E	216	218	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	5	8	first strand
Strand 2	F	20	26	anti-parallel
Strand 3	F	71	76	anti-parallel
Strand 4	F	63	68	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	13	first strand
Strand 2	F	103	106	parallel
Strand 3	F	86	90	anti-parallel
Strand 4	F	35	39	anti-parallel
Strand 5	F	46	50	anti-parallel
Strand 6	F	54	55	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	115	119	first strand
Strand 2	F	131	138	anti-parallel
Strand 3	F	176	182	anti-parallel
Strand 4	F	162	164	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	155	156	first strand
Strand 2	F	145	151	anti-parallel
Strand 3	F	193	199	anti-parallel
Strand 4	F	206	208	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6BF7

Analysis of interatomic Contacts of Structural Units in PDB entry:
6BF7