Analysis of interatomic Contacts of Structural Units in PDB entry:
6BFY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6BFY entry

There are 6 chains in PDB entry 6BFY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN -7	ALA 431
B	GLN -7	GLN 430
C	GLN -7	ALA 431
F	GLN -6	ALA 431
D	GLN -7	GLN 430
E	GLN -7	GLN 430

There are125 helices in PDB entry 6BFY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	-4	0	Right-handed 310
Helix 2	AA2	A	57	61	Right-handed 310
Helix 3	AA3	A	63	72	Right-handed alpha
Helix 4	AA4	A	72	79	Right-handed alpha
Helix 5	AA5	A	85	98	Right-handed alpha
Helix 6	AA6	A	106	125	Right-handed alpha
Helix 7	AA7	A	128	138	Right-handed alpha
Helix 8	AA8	A	156	159	Right-handed 310
Helix 9	AA9	A	177	199	Right-handed alpha
Helix 10	AB1	A	219	232	Right-handed alpha
Helix 11	AB2	A	247	250	Right-handed 310
Helix 12	AB3	A	260	263	Right-handed 310
Helix 13	AB4	A	268	283	Right-handed alpha
Helix 14	AB5	A	296	308	Right-handed alpha
Helix 15	AB6	A	322	332	Right-handed alpha
Helix 16	AB7	A	341	346	Right-handed alpha
Helix 17	AB8	A	347	361	Right-handed alpha
Helix 18	AB9	A	377	386	Right-handed alpha
Helix 19	AC1	A	398	416	Right-handed alpha
Helix 20	AC2	A	417	419	Right-handed 310
Helix 21	AC3	A	422	427	Right-handed 310
Helix 22	AC4	B	-4	0	Right-handed 310
Helix 23	AC5	B	57	61	Right-handed 310
Helix 24	AC6	B	63	72	Right-handed alpha
Helix 25	AC7	B	72	79	Right-handed alpha
Helix 26	AC8	B	85	98	Right-handed alpha
Helix 27	AC9	B	106	126	Right-handed alpha
Helix 28	AD1	B	128	137	Right-handed alpha
Helix 29	AD2	B	156	159	Right-handed 310
Helix 30	AD3	B	177	199	Right-handed alpha
Helix 31	AD4	B	219	232	Right-handed alpha
Helix 32	AD5	B	247	250	Right-handed 310
Helix 33	AD6	B	260	263	Right-handed 310
Helix 34	AD7	B	268	283	Right-handed alpha
Helix 35	AD8	B	296	308	Right-handed alpha
Helix 36	AD9	B	322	332	Right-handed alpha
Helix 37	AE1	B	341	346	Right-handed alpha
Helix 38	AE2	B	347	361	Right-handed alpha
Helix 39	AE3	B	377	386	Right-handed alpha
Helix 40	AE4	B	398	416	Right-handed alpha
Helix 41	AE5	B	417	419	Right-handed 310
Helix 42	AE6	B	422	427	Right-handed 310
Helix 43	AE7	C	-4	0	Right-handed 310
Helix 44	AE8	C	57	61	Right-handed 310
Helix 45	AE9	C	63	72	Right-handed alpha
Helix 46	AF1	C	72	79	Right-handed alpha
Helix 47	AF2	C	85	98	Right-handed alpha
Helix 48	AF3	C	106	125	Right-handed alpha
Helix 49	AF4	C	128	137	Right-handed alpha
Helix 50	AF5	C	156	159	Right-handed 310
Helix 51	AF6	C	177	199	Right-handed alpha
Helix 52	AF7	C	219	232	Right-handed alpha
Helix 53	AF8	C	247	250	Right-handed 310
Helix 54	AF9	C	260	263	Right-handed 310
Helix 55	AG1	C	268	283	Right-handed alpha
Helix 56	AG2	C	296	308	Right-handed alpha
Helix 57	AG3	C	322	333	Right-handed alpha
Helix 58	AG4	C	341	346	Right-handed alpha
Helix 59	AG5	C	347	361	Right-handed alpha
Helix 60	AG6	C	377	386	Right-handed alpha
Helix 61	AG7	C	398	416	Right-handed alpha
Helix 62	AG8	C	417	419	Right-handed 310
Helix 63	AG9	C	422	427	Right-handed 310
Helix 64	AH1	F	-4	0	Right-handed 310
Helix 65	AH2	F	57	61	Right-handed 310
Helix 66	AH3	F	63	72	Right-handed alpha
Helix 67	AH4	F	72	79	Right-handed alpha
Helix 68	AH5	F	85	98	Right-handed alpha
Helix 69	AH6	F	106	125	Right-handed alpha
Helix 70	AH7	F	128	137	Right-handed alpha
Helix 71	AH8	F	156	159	Right-handed 310
Helix 72	AH9	F	177	199	Right-handed alpha
Helix 73	AI1	F	219	232	Right-handed alpha
Helix 74	AI2	F	247	250	Right-handed 310
Helix 75	AI3	F	268	283	Right-handed alpha
Helix 76	AI4	F	296	308	Right-handed alpha
Helix 77	AI5	F	322	332	Right-handed alpha
Helix 78	AI6	F	341	346	Right-handed alpha
Helix 79	AI7	F	347	361	Right-handed alpha
Helix 80	AI8	F	377	386	Right-handed alpha
Helix 81	AI9	F	398	416	Right-handed alpha
Helix 82	AJ1	F	417	419	Right-handed 310
Helix 83	AJ2	F	422	427	Right-handed 310
Helix 84	AJ3	D	-4	0	Right-handed 310
Helix 85	AJ4	D	57	61	Right-handed 310
Helix 86	AJ5	D	63	72	Right-handed alpha
Helix 87	AJ6	D	72	79	Right-handed alpha
Helix 88	AJ7	D	85	98	Right-handed alpha
Helix 89	AJ8	D	106	125	Right-handed alpha
Helix 90	AJ9	D	128	137	Right-handed alpha
Helix 91	AK1	D	156	159	Right-handed 310
Helix 92	AK2	D	177	199	Right-handed alpha
Helix 93	AK3	D	219	232	Right-handed alpha
Helix 94	AK4	D	247	250	Right-handed 310
Helix 95	AK5	D	259	263	Right-handed 310
Helix 96	AK6	D	268	283	Right-handed alpha
Helix 97	AK7	D	296	308	Right-handed alpha
Helix 98	AK8	D	322	332	Right-handed alpha
Helix 99	AK9	D	341	346	Right-handed alpha
Helix 100	AL1	D	347	361	Right-handed alpha
Helix 101	AL2	D	377	386	Right-handed alpha
Helix 102	AL3	D	398	416	Right-handed alpha
Helix 103	AL4	D	417	419	Right-handed 310
Helix 104	AL5	D	422	427	Right-handed 310
Helix 105	AL6	E	-4	0	Right-handed 310
Helix 106	AL7	E	57	61	Right-handed 310
Helix 107	AL8	E	63	72	Right-handed alpha
Helix 108	AL9	E	72	79	Right-handed alpha
Helix 109	AM1	E	85	98	Right-handed alpha
Helix 110	AM2	E	106	125	Right-handed alpha
Helix 111	AM3	E	128	137	Right-handed alpha
Helix 112	AM4	E	156	159	Right-handed 310
Helix 113	AM5	E	177	199	Right-handed alpha
Helix 114	AM6	E	219	232	Right-handed alpha
Helix 115	AM7	E	247	250	Right-handed 310
Helix 116	AM8	E	260	263	Right-handed 310
Helix 117	AM9	E	268	283	Right-handed alpha
Helix 118	AN1	E	296	308	Right-handed alpha
Helix 119	AN2	E	322	332	Right-handed alpha
Helix 120	AN3	E	341	346	Right-handed alpha
Helix 121	AN4	E	347	361	Right-handed alpha
Helix 122	AN5	E	377	386	Right-handed alpha
Helix 123	AN6	E	398	416	Right-handed alpha
Helix 124	AN7	E	417	419	Right-handed 310
Helix 125	AN8	E	422	427	Right-handed 310

There are 18 sheets in PDB entry 6BFY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	12	first strand
Strand 2	A	18	26	anti-parallel
Strand 3	A	31	35	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	147	154	first strand
Strand 2	A	167	171	anti-parallel
Strand 3	A	241	245	anti-parallel
Strand 4	A	285	289	parallel
Strand 5	A	312	315	parallel
Strand 6	A	337	340	parallel
Strand 7	A	364	368	parallel
Strand 8	A	389	392	parallel
Strand 9	A	147	154	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	252	253	first strand
Strand 2	A	256	259	anti-parallel
Strand 3	A	265	267	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	12	first strand
Strand 2	B	18	26	anti-parallel
Strand 3	B	31	35	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	147	148	first strand
Strand 2	B	389	392	parallel
Strand 3	B	364	368	parallel
Strand 4	B	337	340	parallel
Strand 5	B	312	315	parallel
Strand 6	B	285	289	parallel
Strand 7	B	241	245	parallel
Strand 8	B	167	171	anti-parallel
Strand 9	B	150	154	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	252	253	first strand
Strand 2	B	256	259	anti-parallel
Strand 3	B	265	267	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	12	first strand
Strand 2	C	18	26	anti-parallel
Strand 3	C	31	35	anti-parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	147	154	first strand
Strand 2	C	167	171	anti-parallel
Strand 3	C	241	245	anti-parallel
Strand 4	C	285	289	parallel
Strand 5	C	312	315	parallel
Strand 6	C	337	340	parallel
Strand 7	C	364	368	parallel
Strand 8	C	389	392	parallel
Strand 9	C	147	154	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	252	253	first strand
Strand 2	C	256	259	anti-parallel
Strand 3	C	265	267	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	12	first strand
Strand 2	F	18	26	anti-parallel
Strand 3	F	31	35	anti-parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	147	148	first strand
Strand 2	F	389	392	parallel
Strand 3	F	364	368	parallel
Strand 4	F	337	340	parallel
Strand 5	F	312	315	parallel
Strand 6	F	285	289	parallel
Strand 7	F	241	245	parallel
Strand 8	F	167	171	anti-parallel
Strand 9	F	150	154	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	252	253	first strand
Strand 2	F	256	259	anti-parallel
Strand 3	F	265	267	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	12	first strand
Strand 2	D	18	26	anti-parallel
Strand 3	D	31	35	anti-parallel

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There are 9 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	147	148	first strand
Strand 2	D	389	392	parallel
Strand 3	D	364	368	parallel
Strand 4	D	337	340	parallel
Strand 5	D	312	315	parallel
Strand 6	D	285	289	parallel
Strand 7	D	241	245	parallel
Strand 8	D	167	171	anti-parallel
Strand 9	D	150	154	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	252	253	first strand
Strand 2	D	256	257	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	12	first strand
Strand 2	E	18	26	anti-parallel
Strand 3	E	31	35	anti-parallel

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There are 9 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	147	148	first strand
Strand 2	E	389	392	parallel
Strand 3	E	364	368	parallel
Strand 4	E	337	340	parallel
Strand 5	E	312	315	parallel
Strand 6	E	285	289	parallel
Strand 7	E	241	245	parallel
Strand 8	E	167	171	anti-parallel
Strand 9	E	150	154	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	252	253	first strand
Strand 2	E	256	259	anti-parallel
Strand 3	E	265	267	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6BFY

Analysis of interatomic Contacts of Structural Units in PDB entry:
6BFY