Analysis of interatomic Contacts of Structural Units in PDB entry:
6BG2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6BG2 entry

Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 8 chains in PDB entry 6BG2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	GLU 337	TRP 516
C	PHE 518	PHE 671
B	GLU 346	TRP 516
B	PHE 518	PHE 671
A	TYR 336	TRP 516
A	PHE 518	PHE 671
D	LYS 344	TRP 516
D	PHE 518	PHE 671

There are 68 helices in PDB entry 6BG2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	337	354	Right-handed alpha
Helix 2	AA2	C	356	358	Right-handed 310
Helix 3	AA3	C	394	400	Right-handed alpha
Helix 4	AA4	C	402	416	Right-handed alpha
Helix 5	AA5	C	446	454	Right-handed alpha
Helix 6	AA6	C	457	478	Right-handed alpha
Helix 7	AA7	C	486	488	Right-handed 310
Helix 8	AA8	C	521	525	Right-handed 310
Helix 9	AA9	C	526	531	Right-handed alpha
Helix 10	AB1	C	537	554	Right-handed alpha
Helix 11	AB2	C	562	573	Right-handed alpha
Helix 12	AB3	C	574	577	Right-handed 310
Helix 13	AB4	C	584	595	Right-handed alpha
Helix 14	AB5	C	598	602	Right-handed 310
Helix 15	AB6	C	609	615	Right-handed alpha
Helix 16	AB7	C	616	620	Right-handed 310
Helix 17	AB8	C	623	629	Right-handed alpha
Helix 18	AB9	B	348	352	Right-handed 310
Helix 19	AC1	B	356	358	Right-handed 310
Helix 20	AC2	B	394	400	Right-handed alpha
Helix 21	AC3	B	402	416	Right-handed alpha
Helix 22	AC4	B	446	454	Right-handed alpha
Helix 23	AC5	B	457	478	Right-handed alpha
Helix 24	AC6	B	486	488	Right-handed 310
Helix 25	AC7	B	521	525	Right-handed 310
Helix 26	AC8	B	526	531	Right-handed alpha
Helix 27	AC9	B	537	554	Right-handed alpha
Helix 28	AD1	B	562	573	Right-handed alpha
Helix 29	AD2	B	574	577	Right-handed 310
Helix 30	AD3	B	584	595	Right-handed alpha
Helix 31	AD4	B	598	602	Right-handed 310
Helix 32	AD5	B	609	615	Right-handed alpha
Helix 33	AD6	B	616	620	Right-handed 310
Helix 34	AD7	B	623	630	Right-handed alpha
Helix 35	AD8	A	338	354	Right-handed alpha
Helix 36	AD9	A	356	358	Right-handed 310
Helix 37	AE1	A	394	400	Right-handed alpha
Helix 38	AE2	A	402	416	Right-handed alpha
Helix 39	AE3	A	446	454	Right-handed alpha
Helix 40	AE4	A	457	478	Right-handed alpha
Helix 41	AE5	A	486	488	Right-handed 310
Helix 42	AE6	A	521	525	Right-handed 310
Helix 43	AE7	A	526	531	Right-handed alpha
Helix 44	AE8	A	537	554	Right-handed alpha
Helix 45	AE9	A	562	573	Right-handed alpha
Helix 46	AF1	A	574	577	Right-handed 310
Helix 47	AF2	A	584	595	Right-handed alpha
Helix 48	AF3	A	598	602	Right-handed 310
Helix 49	AF4	A	609	615	Right-handed alpha
Helix 50	AF5	A	616	620	Right-handed 310
Helix 51	AF6	A	623	629	Right-handed alpha
Helix 52	AF7	D	348	354	Right-handed alpha
Helix 53	AF8	D	356	358	Right-handed 310
Helix 54	AF9	D	394	400	Right-handed alpha
Helix 55	AG1	D	402	416	Right-handed alpha
Helix 56	AG2	D	446	454	Right-handed alpha
Helix 57	AG3	D	457	478	Right-handed alpha
Helix 58	AG4	D	486	488	Right-handed 310
Helix 59	AG5	D	521	525	Right-handed 310
Helix 60	AG6	D	526	531	Right-handed alpha
Helix 61	AG7	D	537	554	Right-handed alpha
Helix 62	AG8	D	562	573	Right-handed alpha
Helix 63	AG9	D	574	577	Right-handed 310
Helix 64	AH1	D	584	595	Right-handed alpha
Helix 65	AH2	D	598	602	Right-handed 310
Helix 66	AH3	D	609	615	Right-handed alpha
Helix 67	AH4	D	616	620	Right-handed 310
Helix 68	AH5	D	623	629	Right-handed alpha

There are 12 sheets in PDB entry 6BG2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	360	368	first strand
Strand 2	C	373	379	anti-parallel
Strand 3	C	386	393	anti-parallel
Strand 4	C	433	439	anti-parallel
Strand 5	C	424	429	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	444	445	first strand
Strand 2	C	490	492	anti-parallel
Strand 3	C	498	500	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	480	481	first strand
Strand 2	C	507	508	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	360	368	first strand
Strand 2	B	373	379	anti-parallel
Strand 3	B	382	393	anti-parallel
Strand 4	B	433	438	anti-parallel
Strand 5	B	424	429	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	444	445	first strand
Strand 2	B	490	492	anti-parallel
Strand 3	B	498	500	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	480	481	first strand
Strand 2	B	507	508	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	360	367	first strand
Strand 2	A	372	379	anti-parallel
Strand 3	A	382	393	anti-parallel
Strand 4	A	433	439	anti-parallel
Strand 5	A	424	429	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	444	445	first strand
Strand 2	A	490	492	anti-parallel
Strand 3	A	498	500	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	480	481	first strand
Strand 2	A	507	508	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	360	368	first strand
Strand 2	D	373	379	anti-parallel
Strand 3	D	386	393	anti-parallel
Strand 4	D	433	438	anti-parallel
Strand 5	D	424	429	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	444	445	first strand
Strand 2	D	490	492	anti-parallel
Strand 3	D	498	500	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	480	481	first strand
Strand 2	D	507	508	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6BG2

Analysis of interatomic Contacts of Structural Units in PDB entry:
6BG2