Analysis of interatomic Contacts of Structural Units in PDB entry:
6BGD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6BGD entry

There is 1 chain in PDB entry 6BGD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 6TYR 378
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 6BGD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 13Right-handed 310
Helix 2
AA2
A
31 36Right-handed alpha
Helix 3
AA3
A
50 66Right-handed alpha
Helix 4
AA4
A
67 71Right-handed 310
Helix 5
AA5
A
89 103Right-handed alpha
Helix 6
AA6
A
146 162Right-handed alpha
Helix 7
AA7
A
163 165Right-handed 310
Helix 8
AA8
A
172 181Right-handed alpha
Helix 9
AA9
A
197 206Right-handed alpha
Helix 10
AB1
A
216 233Right-handed alpha
Helix 11
AB2
A
237 243Right-handed alpha
Helix 12
AB3
A
263 265Right-handed 310
Helix 13
AB4
A
279 283Right-handed 310
Helix 14
AB5
A
311 317Right-handed alpha
Helix 15
AB6
A
317 329Right-handed alpha
Helix 16
AB7
A
342 348Right-handed alpha
Helix 17
AB8
A
352 356Right-handed 310
Helix 18
AB9
A
368 374Right-handed alpha
Helix 19
AC1
A
375 377Right-handed 310
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There are 3 sheets in PDB entry 6BGD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
259 262first strand
Strand 2
A
267 270anti-parallel
Strand 3
A
41 46parallel
Strand 4
A
15 18parallel
Strand 5
A
358 361parallel
Strand 6
A
300 306parallel
Strand 7
A
331 337parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 122first strand
Strand 2
A
125 136anti-parallel
Strand 3
A
77 84parallel
Strand 4
A
167 170parallel
Strand 5
A
191 192parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 214first strand
Strand 2
A
273 275anti-parallel
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