Analysis of interatomic Contacts of Structural Units in PDB entry:
6BGE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6BGE entry

There are 2 chains in PDB entry 6BGE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 6LYS 328
B
 LEU 6LYS 328
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 6BGE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 14Right-handed alpha
Helix 2
AA2
A
14 42Right-handed alpha
Helix 3
AA3
A
73 76Right-handed 310
Helix 4
AA4
A
77 92Right-handed alpha
Helix 5
AA5
A
141 148Right-handed alpha
Helix 6
AA6
A
156 170Right-handed alpha
Helix 7
AA7
A
183 192Right-handed alpha
Helix 8
AA8
A
193 195Right-handed 310
Helix 9
AA9
A
228 237Right-handed alpha
Helix 10
AB1
A
253 263Right-handed alpha
Helix 11
AB2
A
276 290Right-handed alpha
Helix 12
AB3
A
291 295Right-handed 310
Helix 13
AB4
A
298 310Right-handed alpha
Helix 14
AB5
B
7 14Right-handed alpha
Helix 15
AB6
B
14 42Right-handed alpha
Helix 16
AB7
B
73 76Right-handed 310
Helix 17
AB8
B
77 92Right-handed alpha
Helix 18
AB9
B
141 148Right-handed alpha
Helix 19
AC1
B
156 171Right-handed alpha
Helix 20
AC2
B
183 192Right-handed alpha
Helix 21
AC3
B
193 195Right-handed 310
Helix 22
AC4
B
228 237Right-handed alpha
Helix 23
AC5
B
253 263Right-handed alpha
Helix 24
AC6
B
276 290Right-handed alpha
Helix 25
AC7
B
291 295Right-handed 310
Helix 26
AC8
B
298 310Right-handed alpha
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There are 4 sheets in PDB entry 6BGE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 69first strand
Strand 2
A
55 60anti-parallel
Strand 3
A
45 51anti-parallel
Strand 4
A
129 133anti-parallel
Strand 5
A
113 117anti-parallel
Strand 6
A
103 107anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
218 222first strand
Strand 2
A
201 205parallel
Strand 3
A
243 245parallel
Strand 4
A
268 273parallel
Strand 5
A
174 178parallel
Strand 6
A
312 316parallel
Strand 7
A
322 327anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
65 69first strand
Strand 2
B
55 60anti-parallel
Strand 3
B
45 51anti-parallel
Strand 4
B
129 133anti-parallel
Strand 5
B
113 117anti-parallel
Strand 6
B
103 107anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
218 222first strand
Strand 2
B
201 205parallel
Strand 3
B
243 246parallel
Strand 4
B
268 273parallel
Strand 5
B
174 178parallel
Strand 6
B
312 316parallel
Strand 7
B
322 327anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il