Analysis of interatomic Contacts of Structural Units in PDB entry:
6BGN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6BGN entry

There are 15 chains in PDB entry 6BGN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
PRO 1LYS 59
B
PRO 1VAL 60
C
PRO 1LYS 59
D
PRO 1VAL 60
E
PRO 1SER 58
F
PRO 1LYS 59
G
PRO 1VAL 60
H
PRO 1LYS 59
I
PRO 1SER 58
J
PRO 1VAL 60
K
PRO 1VAL 60
L
PRO 1VAL 60
M
PRO 1SER 58
N
PRO 1LYS 59
O
PRO 1LYS 59
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 6BGN. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
12 32Right-handed alpha
Helix 2
AA2
A
34 37Right-handed 310
Helix 3
AA3
A
46 49Right-handed 310
Helix 4
AA4
B
12 32Right-handed alpha
Helix 5
AA5
B
34 38Right-handed 310
Helix 6
AA6
B
46 49Right-handed 310
Helix 7
AA7
C
12 32Right-handed alpha
Helix 8
AA8
C
34 38Right-handed 310
Helix 9
AA9
C
46 48Right-handed 310
Helix 10
AB1
D
12 32Right-handed alpha
Helix 11
AB2
D
34 37Right-handed 310
Helix 12
AB3
D
46 48Right-handed 310
Helix 13
AB4
E
12 32Right-handed alpha
Helix 14
AB5
E
34 37Right-handed 310
Helix 15
AB6
E
46 48Right-handed 310
Helix 16
AB7
F
12 32Right-handed alpha
Helix 17
AB8
F
34 37Right-handed 310
Helix 18
AB9
F
46 48Right-handed 310
Helix 19
AC1
G
12 32Right-handed alpha
Helix 20
AC2
G
34 37Right-handed 310
Helix 21
AC3
G
46 48Right-handed 310
Helix 22
AC4
G
58 60Right-handed 310
Helix 23
AC5
H
12 32Right-handed alpha
Helix 24
AC6
H
34 37Right-handed 310
Helix 25
AC7
H
46 48Right-handed 310
Helix 26
AC8
I
12 32Right-handed alpha
Helix 27
AC9
I
34 37Right-handed 310
Helix 28
AD1
I
46 48Right-handed 310
Helix 29
AD2
J
12 32Right-handed alpha
Helix 30
AD3
J
34 37Right-handed 310
Helix 31
AD4
J
46 48Right-handed 310
Helix 32
AD5
K
12 32Right-handed alpha
Helix 33
AD6
K
34 37Right-handed 310
Helix 34
AD7
K
46 48Right-handed 310
Helix 35
AD8
K
58 60Right-handed 310
Helix 36
AD9
L
12 32Right-handed alpha
Helix 37
AE1
L
34 37Right-handed 310
Helix 38
AE2
L
46 48Right-handed 310
Helix 39
AE3
L
58 60Right-handed 310
Helix 40
AE4
M
12 32Right-handed alpha
Helix 41
AE5
M
34 37Right-handed 310
Helix 42
AE6
M
46 48Right-handed 310
Helix 43
AE7
N
12 32Right-handed alpha
Helix 44
AE8
N
34 37Right-handed 310
Helix 45
AE9
N
46 48Right-handed 310
Helix 46
AF1
O
12 32Right-handed alpha
Helix 47
AF2
O
34 37Right-handed 310
Helix 48
AF3
O
46 48Right-handed 310
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There are 10 sheets in PDB entry 6BGN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
39 45first strand
Strand 2
B
2 8parallel
Strand 3
A
2 8anti-parallel
Strand 4
A
39 45parallel
Strand 5
C
50 52anti-parallel
Strand 6
C
55 56anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
51 52first strand
Strand 2
A
55 56anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
51 52first strand
Strand 2
B
55 56anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
2 8first strand
Strand 2
C
39 45parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
55 56first strand
Strand 2
F
50 52anti-parallel
Strand 3
D
39 45anti-parallel
Strand 4
D
2 8parallel
Strand 5
E
2 8anti-parallel
Strand 6
E
39 45parallel
Strand 7
G
50 52anti-parallel
Strand 8
G
55 56anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
55 56first strand
Strand 2
D
50 52anti-parallel
Strand 3
H
39 45anti-parallel
Strand 4
H
2 8parallel
Strand 5
G
2 8anti-parallel
Strand 6
G
39 45parallel
Strand 7
I
50 52anti-parallel
Strand 8
I
55 56anti-parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
55 56first strand
Strand 2
E
50 52anti-parallel
Strand 3
I
39 45anti-parallel
Strand 4
I
2 8parallel
Strand 5
F
2 8anti-parallel
Strand 6
F
39 45parallel
Strand 7
H
50 52anti-parallel
Strand 8
H
55 56anti-parallel
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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
55 56first strand
Strand 2
L
50 52anti-parallel
Strand 3
J
39 45anti-parallel
Strand 4
J
2 8parallel
Strand 5
K
2 8anti-parallel
Strand 6
K
39 45parallel
Strand 7
M
50 52anti-parallel
Strand 8
M
55 56anti-parallel
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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
55 56first strand
Strand 2
J
50 52anti-parallel
Strand 3
N
39 45anti-parallel
Strand 4
N
2 8parallel
Strand 5
M
2 8anti-parallel
Strand 6
M
39 45parallel
Strand 7
O
50 52anti-parallel
Strand 8
O
55 56anti-parallel
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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
55 56first strand
Strand 2
K
50 52anti-parallel
Strand 3
O
39 45anti-parallel
Strand 4
O
2 8parallel
Strand 5
L
2 8anti-parallel
Strand 6
L
39 45parallel
Strand 7
N
50 52anti-parallel
Strand 8
N
55 56anti-parallel
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