Analysis of interatomic Contacts of Structural Units in PDB entry:
6BGP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6BGP entry

There are 4 chains in PDB entry 6BGP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 58	THR 417
B	GLU 58	ASP 419
C	LYS 57	ALA 418
D	GLU 58	ASP 419

There are 56 helices in PDB entry 6BGP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	60	72	Right-handed alpha
Helix 2	AA2	A	83	88	Right-handed alpha
Helix 3	AA3	A	101	106	Right-handed alpha
Helix 4	AA4	A	117	121	Right-handed 310
Helix 5	AA5	A	128	140	Right-handed alpha
Helix 6	AA6	A	141	149	Right-handed alpha
Helix 7	AA7	A	200	213	Right-handed alpha
Helix 8	AA8	A	216	220	Right-handed 310
Helix 9	AA9	A	223	233	Right-handed alpha
Helix 10	AB1	A	242	244	Right-handed 310
Helix 11	AB2	A	247	258	Right-handed alpha
Helix 12	AB3	A	373	379	Right-handed 310
Helix 13	AB4	A	380	387	Right-handed alpha
Helix 14	AB5	A	401	408	Right-handed alpha
Helix 15	AB6	B	60	72	Right-handed alpha
Helix 16	AB7	B	83	88	Right-handed alpha
Helix 17	AB8	B	101	106	Right-handed alpha
Helix 18	AB9	B	117	121	Right-handed 310
Helix 19	AC1	B	128	139	Right-handed alpha
Helix 20	AC2	B	141	149	Right-handed alpha
Helix 21	AC3	B	200	213	Right-handed alpha
Helix 22	AC4	B	216	220	Right-handed 310
Helix 23	AC5	B	223	233	Right-handed alpha
Helix 24	AC6	B	242	244	Right-handed 310
Helix 25	AC7	B	247	258	Right-handed alpha
Helix 26	AC8	B	373	379	Right-handed 310
Helix 27	AC9	B	380	387	Right-handed alpha
Helix 28	AD1	B	401	408	Right-handed alpha
Helix 29	AD2	C	60	72	Right-handed alpha
Helix 30	AD3	C	83	88	Right-handed alpha
Helix 31	AD4	C	101	106	Right-handed alpha
Helix 32	AD5	C	117	121	Right-handed 310
Helix 33	AD6	C	128	140	Right-handed alpha
Helix 34	AD7	C	141	149	Right-handed alpha
Helix 35	AD8	C	200	213	Right-handed alpha
Helix 36	AD9	C	216	220	Right-handed 310
Helix 37	AE1	C	223	233	Right-handed alpha
Helix 38	AE2	C	242	244	Right-handed 310
Helix 39	AE3	C	247	258	Right-handed alpha
Helix 40	AE4	C	373	379	Right-handed 310
Helix 41	AE5	C	380	387	Right-handed alpha
Helix 42	AE6	C	401	408	Right-handed alpha
Helix 43	AE7	D	60	72	Right-handed alpha
Helix 44	AE8	D	83	88	Right-handed alpha
Helix 45	AE9	D	101	106	Right-handed alpha
Helix 46	AF1	D	117	121	Right-handed 310
Helix 47	AF2	D	128	139	Right-handed alpha
Helix 48	AF3	D	141	149	Right-handed alpha
Helix 49	AF4	D	200	213	Right-handed alpha
Helix 50	AF5	D	216	220	Right-handed 310
Helix 51	AF6	D	223	233	Right-handed alpha
Helix 52	AF7	D	242	244	Right-handed 310
Helix 53	AF8	D	247	258	Right-handed alpha
Helix 54	AF9	D	373	379	Right-handed 310
Helix 55	AG1	D	380	387	Right-handed alpha
Helix 56	AG2	D	401	408	Right-handed alpha

There are 12 sheets in PDB entry 6BGP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	100	first strand
Strand 2	A	182	185	anti-parallel
Strand 3	A	188	189	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	162	169	first strand
Strand 2	A	172	179	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	235	240	first strand
Strand 2	A	410	415	anti-parallel
Strand 3	A	261	265	anti-parallel
Strand 4	A	336	346	anti-parallel
Strand 5	A	349	357	anti-parallel
Strand 6	A	396	400	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	100	first strand
Strand 2	B	182	185	anti-parallel
Strand 3	B	188	189	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	162	169	first strand
Strand 2	B	172	179	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	235	240	first strand
Strand 2	B	410	415	anti-parallel
Strand 3	B	261	265	anti-parallel
Strand 4	B	336	346	anti-parallel
Strand 5	B	349	357	anti-parallel
Strand 6	B	396	400	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	100	first strand
Strand 2	C	182	185	anti-parallel
Strand 3	C	188	189	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	162	169	first strand
Strand 2	C	172	179	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	235	240	first strand
Strand 2	C	410	415	anti-parallel
Strand 3	C	261	265	anti-parallel
Strand 4	C	336	346	anti-parallel
Strand 5	C	349	357	anti-parallel
Strand 6	C	396	400	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	98	100	first strand
Strand 2	D	182	185	anti-parallel
Strand 3	D	188	189	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	162	169	first strand
Strand 2	D	172	179	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	235	240	first strand
Strand 2	D	410	415	anti-parallel
Strand 3	D	261	265	anti-parallel
Strand 4	D	336	346	anti-parallel
Strand 5	D	349	357	anti-parallel
Strand 6	D	396	400	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6BGP

Analysis of interatomic Contacts of Structural Units in PDB entry:
6BGP