Analysis of interatomic Contacts of Structural Units in PDB entry:
6BGT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6BGT entry

There are 3 chains in PDB entry 6BGT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	THR 1	ASN 607
A	ASP 1	ARG 211
B	GLU 1	VAL 218

There are 26 helices in PDB entry 6BGT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	16	18	Right-handed 310
Helix 2	AA2	C	19	29	Right-handed alpha
Helix 3	AA3	C	49	53	Right-handed 310
Helix 4	AA4	C	85	88	Right-handed 310
Helix 5	AA5	C	141	145	Right-handed 310
Helix 6	AA6	C	146	151	Right-handed alpha
Helix 7	AA7	C	152	156	Right-handed 310
Helix 8	AA8	C	186	190	Right-handed 310
Helix 9	AA9	C	209	213	Right-handed 310
Helix 10	AB1	C	325	329	Right-handed 310
Helix 11	AB2	C	338	343	Right-handed 310
Helix 12	AB3	C	355	360	Right-handed 310
Helix 13	AB4	C	362	366	Right-handed 310
Helix 14	AB5	C	373	381	Right-handed 310
Helix 15	AB6	C	400	404	Right-handed 310
Helix 16	AB7	C	414	417	Right-handed 310
Helix 17	AB8	C	459	464	Right-handed alpha
Helix 18	AB9	C	478	485	Right-handed alpha
Helix 19	AC1	C	493	497	Right-handed 310
Helix 20	AC2	A	79	83	Right-handed 310
Helix 21	AC3	A	121	126	Right-handed alpha
Helix 22	AC4	A	183	188	Right-handed alpha
Helix 23	AC5	B	28	32	Right-handed 310
Helix 24	AC6	B	62	65	Right-handed 310
Helix 25	AC7	B	87	91	Right-handed 310
Helix 26	AC8	B	163	165	Right-handed 310

There are 23 sheets in PDB entry 6BGT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	5	first strand
Strand 2	C	33	35	parallel
Strand 3	C	57	58	parallel
Strand 4	C	79	80	parallel
Strand 5	C	125	126	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	38	41	first strand
Strand 2	C	62	65	parallel
Strand 3	C	90	95	parallel
Strand 4	C	130	134	parallel
Strand 5	C	160	162	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	218	222	first strand
Strand 2	C	230	233	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	236	238	first strand
Strand 2	C	241	243	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	250	252	first strand
Strand 2	C	259	261	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	267	269	first strand
Strand 2	C	272	274	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	289	290	first strand
Strand 2	C	282	284	anti-parallel
Strand 3	C	307	311	parallel
Strand 4	C	297	301	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	320	321	first strand
Strand 2	C	347	349	parallel
Strand 3	C	383	384	parallel
Strand 4	C	408	409	parallel
Strand 5	C	438	439	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	352	354	first strand
Strand 2	C	388	390	parallel
Strand 3	C	419	424	parallel
Strand 4	C	443	447	parallel
Strand 5	C	471	474	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	517	519	first strand
Strand 2	C	512	514	anti-parallel
Strand 3	C	537	540	parallel
Strand 4	C	531	534	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	568	570	first strand
Strand 2	C	573	575	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	593	595	first strand
Strand 2	C	601	603	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	7	first strand
Strand 2	A	19	25	anti-parallel
Strand 3	A	70	75	anti-parallel
Strand 4	A	62	67	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	14	first strand
Strand 2	A	102	107	parallel
Strand 3	A	84	90	anti-parallel
Strand 4	A	33	38	anti-parallel
Strand 5	A	45	49	anti-parallel
Strand 6	A	53	54	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	14	first strand
Strand 2	A	102	107	parallel
Strand 3	A	84	90	anti-parallel
Strand 4	A	97	98	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	114	118	first strand
Strand 2	A	129	139	anti-parallel
Strand 3	A	173	182	anti-parallel
Strand 4	A	159	163	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	150	first strand
Strand 2	A	191	197	anti-parallel
Strand 3	A	205	210	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	7	first strand
Strand 2	B	18	25	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	68	73	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	12	first strand
Strand 2	B	114	118	parallel
Strand 3	B	92	98	anti-parallel
Strand 4	B	34	39	anti-parallel
Strand 5	B	46	51	anti-parallel
Strand 6	B	58	60	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	12	first strand
Strand 2	B	114	118	parallel
Strand 3	B	92	98	anti-parallel
Strand 4	B	109	110	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	131	first strand
Strand 2	B	143	152	anti-parallel
Strand 3	B	183	191	anti-parallel
Strand 4	B	170	172	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	131	first strand
Strand 2	B	143	152	anti-parallel
Strand 3	B	183	191	anti-parallel
Strand 4	B	176	177	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	158	161	first strand
Strand 2	B	202	207	anti-parallel
Strand 3	B	212	217	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6BGT

Analysis of interatomic Contacts of Structural Units in PDB entry:
6BGT