Analysis of interatomic Contacts of Structural Units in PDB entry:
6BI4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6BI4 entry

There are 4 chains in PDB entry 6BI4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 0	LYS 321
B	ALA 0	LYS 321
C	ALA 0	LYS 321
D	ALA 0	TRP 317

There are 60 helices in PDB entry 6BI4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	24	Right-handed alpha
Helix 2	AA2	A	40	45	Right-handed 310
Helix 3	AA3	A	62	74	Right-handed alpha
Helix 4	AA4	A	96	102	Right-handed alpha
Helix 5	AA5	A	102	115	Right-handed alpha
Helix 6	AA6	A	127	130	Right-handed 310
Helix 7	AA7	A	148	169	Right-handed alpha
Helix 8	AA8	A	189	200	Right-handed alpha
Helix 9	AA9	A	219	233	Right-handed alpha
Helix 10	AB1	A	249	260	Right-handed alpha
Helix 11	AB2	A	263	265	Right-handed 310
Helix 12	AB3	A	284	292	Right-handed alpha
Helix 13	AB4	A	298	313	Right-handed alpha
Helix 14	AB5	A	313	318	Right-handed alpha
Helix 15	AB6	A	319	321	Right-handed 310
Helix 16	AB7	B	10	24	Right-handed alpha
Helix 17	AB8	B	40	45	Right-handed 310
Helix 18	AB9	B	62	74	Right-handed alpha
Helix 19	AC1	B	96	102	Right-handed alpha
Helix 20	AC2	B	102	115	Right-handed alpha
Helix 21	AC3	B	127	130	Right-handed 310
Helix 22	AC4	B	148	169	Right-handed alpha
Helix 23	AC5	B	189	200	Right-handed alpha
Helix 24	AC6	B	219	233	Right-handed alpha
Helix 25	AC7	B	249	260	Right-handed alpha
Helix 26	AC8	B	263	265	Right-handed 310
Helix 27	AC9	B	284	292	Right-handed alpha
Helix 28	AD1	B	298	313	Right-handed alpha
Helix 29	AD2	B	313	318	Right-handed alpha
Helix 30	AD3	B	319	321	Right-handed 310
Helix 31	AD4	C	10	24	Right-handed alpha
Helix 32	AD5	C	40	45	Right-handed 310
Helix 33	AD6	C	62	74	Right-handed alpha
Helix 34	AD7	C	96	102	Right-handed alpha
Helix 35	AD8	C	102	115	Right-handed alpha
Helix 36	AD9	C	127	130	Right-handed 310
Helix 37	AE1	C	148	169	Right-handed alpha
Helix 38	AE2	C	189	200	Right-handed alpha
Helix 39	AE3	C	219	233	Right-handed alpha
Helix 40	AE4	C	249	260	Right-handed alpha
Helix 41	AE5	C	263	265	Right-handed 310
Helix 42	AE6	C	284	292	Right-handed alpha
Helix 43	AE7	C	298	313	Right-handed alpha
Helix 44	AE8	C	313	318	Right-handed alpha
Helix 45	AE9	C	319	321	Right-handed 310
Helix 46	AF1	D	10	24	Right-handed alpha
Helix 47	AF2	D	40	45	Right-handed 310
Helix 48	AF3	D	62	74	Right-handed alpha
Helix 49	AF4	D	96	102	Right-handed alpha
Helix 50	AF5	D	102	115	Right-handed alpha
Helix 51	AF6	D	127	130	Right-handed 310
Helix 52	AF7	D	148	169	Right-handed alpha
Helix 53	AF8	D	189	200	Right-handed alpha
Helix 54	AF9	D	219	233	Right-handed alpha
Helix 55	AG1	D	249	260	Right-handed alpha
Helix 56	AG2	D	263	265	Right-handed 310
Helix 57	AG3	D	284	292	Right-handed alpha
Helix 58	AG4	D	298	313	Right-handed alpha
Helix 59	AG5	D	313	318	Right-handed alpha
Helix 60	AG6	D	319	321	Right-handed 310

There are 16 sheets in PDB entry 6BI4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	57	first strand
Strand 2	A	28	33	parallel
Strand 3	A	2	6	parallel
Strand 4	A	77	80	parallel
Strand 5	A	119	125	parallel
Strand 6	A	172	177	parallel
Strand 7	A	238	241	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	179	181	first strand
Strand 2	A	216	218	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	204	206	first strand
Strand 2	A	267	269	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	213	214	first strand
Strand 2	A	247	248	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	57	first strand
Strand 2	B	28	33	parallel
Strand 3	B	2	6	parallel
Strand 4	B	77	80	parallel
Strand 5	B	119	125	parallel
Strand 6	B	172	177	parallel
Strand 7	B	238	241	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	179	181	first strand
Strand 2	B	216	218	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	204	206	first strand
Strand 2	B	267	269	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	213	214	first strand
Strand 2	B	247	248	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	57	first strand
Strand 2	C	28	33	parallel
Strand 3	C	2	6	parallel
Strand 4	C	77	80	parallel
Strand 5	C	119	125	parallel
Strand 6	C	172	177	parallel
Strand 7	C	238	241	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	179	181	first strand
Strand 2	C	216	218	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	204	206	first strand
Strand 2	C	267	269	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	213	214	first strand
Strand 2	C	247	248	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	57	first strand
Strand 2	D	28	33	parallel
Strand 3	D	2	6	parallel
Strand 4	D	77	80	parallel
Strand 5	D	119	125	parallel
Strand 6	D	172	177	parallel
Strand 7	D	238	241	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	179	181	first strand
Strand 2	D	216	218	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	204	206	first strand
Strand 2	D	267	269	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	213	214	first strand
Strand 2	D	247	248	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6BI4

Analysis of interatomic Contacts of Structural Units in PDB entry:
6BI4