Analysis of interatomic Contacts of Structural Units in PDB entry:
6BI8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6BI8 entry

There are 4 chains in PDB entry 6BI8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 1543	ASP 1801
B	ASN 1543	ASP 1801
C	ASP 4	GLY 156
D	ASP 4	GLY 156

There are 27 helices in PDB entry 6BI8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1543	1554	Right-handed alpha
Helix 2	AA2	A	1559	1571	Right-handed alpha
Helix 3	AA3	A	1591	1602	Right-handed alpha
Helix 4	AA4	A	1611	1623	Right-handed alpha
Helix 5	AA5	A	1626	1637	Right-handed alpha
Helix 6	AA6	A	1646	1656	Right-handed alpha
Helix 7	AA7	A	1685	1687	Right-handed 310
Helix 8	AA8	A	1695	1701	Right-handed alpha
Helix 9	AA9	B	1544	1554	Right-handed alpha
Helix 10	AB1	B	1559	1571	Right-handed alpha
Helix 11	AB2	B	1572	1574	Right-handed 310
Helix 12	AB3	B	1591	1602	Right-handed alpha
Helix 13	AB4	B	1611	1623	Right-handed alpha
Helix 14	AB5	B	1626	1637	Right-handed alpha
Helix 15	AB6	B	1646	1656	Right-handed alpha
Helix 16	AB7	B	1685	1687	Right-handed 310
Helix 17	AB8	B	1695	1701	Right-handed alpha
Helix 18	AB9	C	24	37	Right-handed alpha
Helix 19	AC1	C	39	41	Right-handed 310
Helix 20	AC2	C	103	116	Right-handed alpha
Helix 21	AC3	C	118	120	Right-handed 310
Helix 22	AC4	C	136	141	Right-handed 310
Helix 23	AC5	D	24	36	Right-handed alpha
Helix 24	AC6	D	39	41	Right-handed 310
Helix 25	AC7	D	103	116	Right-handed alpha
Helix 26	AC8	D	118	120	Right-handed 310
Helix 27	AC9	D	136	141	Right-handed 310

There are 14 sheets in PDB entry 6BI8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1576	1579	first strand
Strand 2	A	1582	1585	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1607	1609	first strand
Strand 2	A	1658	1660	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1676	1683	first strand
Strand 2	A	1665	1672	anti-parallel
Strand 3	A	1712	1721	anti-parallel
Strand 4	A	1703	1706	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1676	1683	first strand
Strand 2	A	1665	1672	anti-parallel
Strand 3	A	1712	1721	anti-parallel
Strand 4	A	1797	1799	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1689	1691	first strand
Strand 2	A	1724	1737	parallel
Strand 3	A	1783	1794	anti-parallel
Strand 4	A	1746	1751	anti-parallel
Strand 5	A	1759	1766	anti-parallel
Strand 6	A	1769	1774	anti-parallel
Strand 7	A	1777	1781	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1576	1579	first strand
Strand 2	B	1582	1585	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1607	1609	first strand
Strand 2	B	1658	1660	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1676	1683	first strand
Strand 2	B	1665	1672	anti-parallel
Strand 3	B	1712	1721	anti-parallel
Strand 4	B	1703	1706	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1676	1683	first strand
Strand 2	B	1665	1672	anti-parallel
Strand 3	B	1712	1721	anti-parallel
Strand 4	B	1797	1799	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1689	1691	first strand
Strand 2	B	1724	1737	parallel
Strand 3	B	1783	1794	anti-parallel
Strand 4	B	1746	1751	anti-parallel
Strand 5	B	1759	1766	anti-parallel
Strand 6	B	1769	1774	anti-parallel
Strand 7	B	1777	1781	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	14	15	first strand
Strand 2	C	7	8	anti-parallel
Strand 3	C	71	75	parallel
Strand 4	C	43	47	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	93	98	first strand
Strand 2	C	82	87	anti-parallel
Strand 3	C	147	152	parallel
Strand 4	C	122	126	anti-parallel
Strand 5	C	129	130	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	15	17	first strand
Strand 2	D	5	9	anti-parallel
Strand 3	D	70	75	parallel
Strand 4	D	43	47	anti-parallel
Strand 5	D	52	53	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	93	98	first strand
Strand 2	D	82	87	anti-parallel
Strand 3	D	147	152	parallel
Strand 4	D	122	126	anti-parallel
Strand 5	D	129	130	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6BI8

Analysis of interatomic Contacts of Structural Units in PDB entry:
6BI8