Analysis of interatomic Contacts of Structural Units in PDB entry:
6BIF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6BIF entry

There are 2 chains in PDB entry 6BIF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 5ILE 32
A
 GLY 34PRO 285
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 6BIF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 24Right-handed alpha
Helix 2
AA2
A
38 44Right-handed 310
Helix 3
AA3
A
53 55Right-handed 310
Helix 4
AA4
A
88 92Right-handed 310
Helix 5
AA5
A
94 109Right-handed alpha
Helix 6
AA6
A
140 144Right-handed alpha
Helix 7
AA7
A
169 183Right-handed alpha
Helix 8
AA8
A
185 187Right-handed 310
Helix 9
AA9
A
204 214Right-handed alpha
Helix 10
AB1
A
223 233Right-handed alpha
Helix 11
AB2
A
247 254Right-handed alpha
Helix 12
AB3
A
258 284Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 6BIF.

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 51first strand
Strand 2
A
69 75anti-parallel
Strand 3
A
78 84anti-parallel
Strand 4
A
29 32parallel
Strand 5
A
112 121parallel
Strand 6
A
236 246parallel
Strand 7
A
131 139anti-parallel
Strand 8
A
189 196parallel
Strand 9
A
218 220parallel
Strand 10
A
112 121anti-parallel
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