Analysis of interatomic Contacts of Structural Units in PDB entry:
6BII


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6BII entry

There are 2 chains in PDB entry 6BII (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2PHE 333
B
 LYS 2PHE 333
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 34 helices in PDB entry 6BII. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 21Right-handed alpha
Helix 2
AA2
A
35 43Right-handed alpha
Helix 3
AA3
A
44 46Right-handed 310
Helix 4
AA4
A
58 65Right-handed alpha
Helix 5
AA5
A
82 89Right-handed alpha
Helix 6
AA6
A
100 118Right-handed alpha
Helix 7
AA7
A
118 128Right-handed alpha
Helix 8
AA8
A
129 135Right-handed alpha
Helix 9
AA9
A
159 172Right-handed alpha
Helix 10
AB1
A
184 192Right-handed alpha
Helix 11
AB2
A
197 205Right-handed alpha
Helix 12
AB3
A
223 230Right-handed alpha
Helix 13
AB4
A
241 245Right-handed 310
Helix 14
AB5
A
246 256Right-handed alpha
Helix 15
AB6
A
274 279Right-handed alpha
Helix 16
AB7
A
293 313Right-handed alpha
Helix 17
AB8
A
322 328Right-handed 310
Helix 18
AB9
B
12 21Right-handed alpha
Helix 19
AC1
B
35 43Right-handed alpha
Helix 20
AC2
B
44 46Right-handed 310
Helix 21
AC3
B
58 65Right-handed alpha
Helix 22
AC4
B
82 89Right-handed alpha
Helix 23
AC5
B
100 118Right-handed alpha
Helix 24
AC6
B
118 128Right-handed alpha
Helix 25
AC7
B
129 135Right-handed alpha
Helix 26
AC8
B
159 172Right-handed alpha
Helix 27
AC9
B
184 192Right-handed alpha
Helix 28
AD1
B
197 205Right-handed alpha
Helix 29
AD2
B
223 230Right-handed alpha
Helix 30
AD3
B
241 245Right-handed 310
Helix 31
AD4
B
246 257Right-handed alpha
Helix 32
AD5
B
274 279Right-handed alpha
Helix 33
AD6
B
293 313Right-handed alpha
Helix 34
AD7
B
322 328Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 6BII. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 27first strand
Strand 2
A
4 7parallel
Strand 3
A
48 51parallel
Strand 4
A
70 73parallel
Strand 5
A
92 94parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 195first strand
Strand 2
A
175 179parallel
Strand 3
A
152 156parallel
Strand 4
A
207 210parallel
Strand 5
A
235 238parallel
Strand 6
A
261 264parallel
Strand 7
A
283 285parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
24 27first strand
Strand 2
B
4 7parallel
Strand 3
B
48 51parallel
Strand 4
B
70 73parallel
Strand 5
B
92 94parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
193 195first strand
Strand 2
B
175 179parallel
Strand 3
B
152 156parallel
Strand 4
B
207 210parallel
Strand 5
B
235 238parallel
Strand 6
B
261 264parallel
Strand 7
B
283 285parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il