Analysis of interatomic Contacts of Structural Units in PDB entry:
6BIQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6BIQ entry

There are 4 chains in PDB entry 6BIQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 10	LYS 275
B	SER 11	LYS 275
C	SER 11	LYS 275
D	GLN 13	THR 274

There are 20 helices in PDB entry 6BIQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	137	139	Right-handed 310
Helix 2	AA2	A	150	161	Right-handed alpha
Helix 3	AA3	A	178	190	Right-handed alpha
Helix 4	AA4	A	197	202	Right-handed alpha
Helix 5	AA5	A	210	214	Right-handed 310
Helix 6	AA6	B	137	139	Right-handed 310
Helix 7	AA7	B	150	161	Right-handed alpha
Helix 8	AA8	B	178	190	Right-handed alpha
Helix 9	AA9	B	197	202	Right-handed alpha
Helix 10	AB1	B	210	214	Right-handed 310
Helix 11	AB2	C	137	139	Right-handed 310
Helix 12	AB3	C	150	161	Right-handed alpha
Helix 13	AB4	C	178	189	Right-handed alpha
Helix 14	AB5	C	197	202	Right-handed alpha
Helix 15	AB6	C	210	214	Right-handed 310
Helix 16	AB7	D	137	139	Right-handed 310
Helix 17	AB8	D	150	161	Right-handed alpha
Helix 18	AB9	D	178	189	Right-handed alpha
Helix 19	AC1	D	197	202	Right-handed alpha
Helix 20	AC2	D	210	214	Right-handed 310

There are 23 sheets in PDB entry 6BIQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	46	first strand
Strand 2	A	27	31	anti-parallel
Strand 3	A	68	73	anti-parallel
Strand 4	A	60	65	anti-parallel
Strand 5	A	50	57	anti-parallel
Strand 6	A	16	20	anti-parallel
Strand 7	A	77	80	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	85	first strand
Strand 2	A	111	119	anti-parallel
Strand 3	A	122	127	anti-parallel
Strand 4	A	130	135	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	93	first strand
Strand 2	A	102	106	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	166	167	first strand
Strand 2	A	176	177	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	206	208	first strand
Strand 2	A	266	271	anti-parallel
Strand 3	A	219	222	anti-parallel
Strand 4	A	234	240	anti-parallel
Strand 5	A	243	248	anti-parallel
Strand 6	A	253	258	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	68	73	first strand
Strand 2	B	60	65	anti-parallel
Strand 3	B	50	57	anti-parallel
Strand 4	B	16	20	anti-parallel
Strand 5	B	77	80	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	30	first strand
Strand 2	B	43	46	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	82	85	first strand
Strand 2	B	111	119	anti-parallel
Strand 3	B	122	127	anti-parallel
Strand 4	B	130	135	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	93	first strand
Strand 2	B	102	106	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	166	167	first strand
Strand 2	B	176	177	parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	206	207	first strand
Strand 2	B	266	271	anti-parallel
Strand 3	B	219	222	anti-parallel
Strand 4	B	234	240	anti-parallel
Strand 5	B	243	248	anti-parallel
Strand 6	B	253	258	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	68	73	first strand
Strand 2	C	60	65	anti-parallel
Strand 3	C	50	57	anti-parallel
Strand 4	C	16	20	anti-parallel
Strand 5	C	77	80	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	30	first strand
Strand 2	C	43	46	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	82	85	first strand
Strand 2	C	111	119	anti-parallel
Strand 3	C	122	127	anti-parallel
Strand 4	C	130	135	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	90	93	first strand
Strand 2	C	102	106	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	166	167	first strand
Strand 2	C	176	177	parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	206	207	first strand
Strand 2	C	266	271	anti-parallel
Strand 3	C	219	222	anti-parallel
Strand 4	C	234	240	anti-parallel
Strand 5	C	243	248	anti-parallel
Strand 6	C	253	258	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	68	73	first strand
Strand 2	D	60	65	anti-parallel
Strand 3	D	50	57	anti-parallel
Strand 4	D	16	20	anti-parallel
Strand 5	D	77	80	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	27	30	first strand
Strand 2	D	43	46	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	82	85	first strand
Strand 2	D	111	116	anti-parallel
Strand 3	D	122	127	anti-parallel
Strand 4	D	130	135	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	91	93	first strand
Strand 2	D	102	105	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	166	167	first strand
Strand 2	D	176	177	parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	206	207	first strand
Strand 2	D	266	271	anti-parallel
Strand 3	D	219	222	anti-parallel
Strand 4	D	234	240	anti-parallel
Strand 5	D	243	248	anti-parallel
Strand 6	D	253	258	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6BIQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6BIQ