Analysis of interatomic Contacts of Structural Units in PDB entry:
6BJ5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6BJ5 entry

There are 6 chains in PDB entry 6BJ5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ASP 17	THR 309
F	LEU 322	THR 359
A	ARG 16	THR 307
G	ALA 321	THR 359
C	ASP 17	THR 304
H	ALA 321	GLU 360

There are 32 helices in PDB entry 6BJ5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	17	22	Right-handed alpha
Helix 2	AA2	B	22	27	Right-handed alpha
Helix 3	AA3	B	36	50	Right-handed alpha
Helix 4	AA4	B	52	59	Right-handed alpha
Helix 5	AA5	B	87	99	Right-handed alpha
Helix 6	AA6	B	111	121	Right-handed alpha
Helix 7	AA7	B	155	159	Right-handed 310
Helix 8	AA8	B	213	221	Right-handed alpha
Helix 9	AA9	B	222	233	Right-handed alpha
Helix 10	AB1	B	253	260	Right-handed alpha
Helix 11	AB2	B	263	267	Right-handed 310
Helix 12	AB3	A	18	27	Right-handed alpha
Helix 13	AB4	A	36	51	Right-handed alpha
Helix 14	AB5	A	52	59	Right-handed alpha
Helix 15	AB6	A	87	99	Right-handed alpha
Helix 16	AB7	A	111	120	Right-handed alpha
Helix 17	AB8	A	152	156	Right-handed 310
Helix 18	AB9	A	211	219	Right-handed alpha
Helix 19	AC1	A	220	231	Right-handed alpha
Helix 20	AC2	A	251	258	Right-handed alpha
Helix 21	AC3	A	261	265	Right-handed 310
Helix 22	AC4	C	18	22	Right-handed alpha
Helix 23	AC5	C	22	27	Right-handed alpha
Helix 24	AC6	C	36	51	Right-handed alpha
Helix 25	AC7	C	52	59	Right-handed alpha
Helix 26	AC8	C	87	99	Right-handed alpha
Helix 27	AC9	C	110	121	Right-handed alpha
Helix 28	AD1	C	148	152	Right-handed 310
Helix 29	AD2	C	208	216	Right-handed alpha
Helix 30	AD3	C	217	228	Right-handed alpha
Helix 31	AD4	C	248	255	Right-handed alpha
Helix 32	AD5	C	258	262	Right-handed 310

There are 11 sheets in PDB entry 6BJ5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	33	35	first strand
Strand 2	F	342	349	anti-parallel
Strand 3	F	331	337	anti-parallel
Strand 4	B	204	211	anti-parallel
Strand 5	B	192	198	anti-parallel
Strand 6	B	184	187	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	105	first strand
Strand 2	B	73	81	parallel
Strand 3	B	138	149	anti-parallel
Strand 4	B	299	308	anti-parallel
Strand 5	B	287	296	anti-parallel
Strand 6	B	245	252	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	160	166	first strand
Strand 2	B	169	181	anti-parallel
Strand 3	B	237	243	anti-parallel
Strand 4	F	323	326	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	160	166	first strand
Strand 2	B	169	181	anti-parallel
Strand 3	F	354	356	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	35	first strand
Strand 2	G	342	349	anti-parallel
Strand 3	G	331	337	anti-parallel
Strand 4	A	202	209	anti-parallel
Strand 5	A	189	196	anti-parallel
Strand 6	A	166	185	anti-parallel
Strand 7	A	232	241	anti-parallel
Strand 8	G	323	326	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	157	163	first strand
Strand 2	A	166	185	anti-parallel
Strand 3	G	354	355	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	103	105	first strand
Strand 2	A	73	81	parallel
Strand 3	A	135	146	anti-parallel
Strand 4	A	297	306	anti-parallel
Strand 5	A	285	294	anti-parallel
Strand 6	A	243	250	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	33	35	first strand
Strand 2	H	342	349	anti-parallel
Strand 3	H	331	337	anti-parallel
Strand 4	C	199	206	anti-parallel
Strand 5	C	187	193	anti-parallel
Strand 6	C	177	180	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	103	105	first strand
Strand 2	C	73	81	parallel
Strand 3	C	131	142	anti-parallel
Strand 4	C	294	303	anti-parallel
Strand 5	C	282	290	anti-parallel
Strand 6	C	240	247	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	153	159	first strand
Strand 2	C	162	174	anti-parallel
Strand 3	C	232	238	anti-parallel
Strand 4	H	323	326	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	153	159	first strand
Strand 2	C	162	174	anti-parallel
Strand 3	H	354	355	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6BJ5

Analysis of interatomic Contacts of Structural Units in PDB entry:
6BJ5