Analysis of interatomic Contacts of Structural Units in PDB entry:
6BJA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6BJA entry

There are 2 chains in PDB entry 6BJA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 6VAL 91
A
 SER 93LEU 394
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 6BJA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 46Right-handed alpha
Helix 2
AA2
A
48 52Right-handed 310
Helix 3
AA3
A
68 77Right-handed alpha
Helix 4
AA4
A
90 92Right-handed 310
Helix 5
AA5
A
93 108Right-handed alpha
Helix 6
AA6
A
123 125Right-handed 310
Helix 7
AA7
A
144 148Right-handed alpha
Helix 8
AA8
A
159 170Right-handed alpha
Helix 9
AA9
A
173 195Right-handed alpha
Helix 10
AB1
A
220 225Right-handed 310
Helix 11
AB2
A
226 233Right-handed 310
Helix 12
AB3
A
265 272Right-handed alpha
Helix 13
AB4
A
288 293Right-handed 310
Helix 14
AB5
A
294 308Right-handed alpha
Helix 15
AB6
A
310 314Right-handed 310
Helix 16
AB7
A
323 335Right-handed alpha
Helix 17
AB8
A
337 341Right-handed 310
Helix 18
AB9
A
346 351Right-handed alpha
Helix 19
AC1
A
353 355Right-handed 310
Helix 20
AC2
A
356 369Right-handed alpha
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There are 4 sheets in PDB entry 6BJA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 20first strand
Strand 2
A
254 264anti-parallel
Strand 3
A
113 121anti-parallel
Strand 4
A
54 58parallel
Strand 5
A
84 88parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 20first strand
Strand 2
A
254 264anti-parallel
Strand 3
A
8 15anti-parallel
Strand 4
A
277 286anti-parallel
Strand 5
A
385 393anti-parallel
Strand 6
A
374 381anti-parallel
Strand 7
A
316 319parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 128first strand
Strand 2
A
142 143anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 152first strand
Strand 2
A
157 158anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il