Analysis of interatomic Contacts of Structural Units in PDB entry:
6BJB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6BJB entry

There are 2 chains in PDB entry 6BJB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 2LEU 390
B
 ARG 2LEU 390
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 6BJB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 5Right-handed 310
Helix 2
AA2
A
28 45Right-handed alpha
Helix 3
AA3
A
47 51Right-handed 310
Helix 4
AA4
A
67 76Right-handed alpha
Helix 5
AA5
A
89 91Right-handed 310
Helix 6
AA6
A
92 107Right-handed alpha
Helix 7
AA7
A
122 124Right-handed 310
Helix 8
AA8
A
143 148Right-handed alpha
Helix 9
AA9
A
157 169Right-handed alpha
Helix 10
AB1
A
172 193Right-handed alpha
Helix 11
AB2
A
227 231Right-handed 310
Helix 12
AB3
A
261 268Right-handed alpha
Helix 13
AB4
A
284 290Right-handed 310
Helix 14
AB5
A
291 304Right-handed alpha
Helix 15
AB6
A
306 310Right-handed 310
Helix 16
AB7
A
320 331Right-handed alpha
Helix 17
AB8
A
333 337Right-handed 310
Helix 18
AB9
A
342 347Right-handed alpha
Helix 19
AC1
A
352 365Right-handed alpha
Helix 20
AC2
B
3 5Right-handed 310
Helix 21
AC3
B
28 45Right-handed alpha
Helix 22
AC4
B
47 51Right-handed 310
Helix 23
AC5
B
67 76Right-handed alpha
Helix 24
AC6
B
89 91Right-handed 310
Helix 25
AC7
B
92 107Right-handed alpha
Helix 26
AC8
B
143 148Right-handed alpha
Helix 27
AC9
B
158 169Right-handed alpha
Helix 28
AD1
B
172 193Right-handed alpha
Helix 29
AD2
B
227 231Right-handed 310
Helix 30
AD3
B
261 268Right-handed alpha
Helix 31
AD4
B
284 289Right-handed 310
Helix 32
AD5
B
290 304Right-handed alpha
Helix 33
AD6
B
306 310Right-handed 310
Helix 34
AD7
B
320 331Right-handed alpha
Helix 35
AD8
B
333 337Right-handed 310
Helix 36
AD9
B
342 347Right-handed alpha
Helix 37
AE1
B
349 365Right-handed alpha
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There are 6 sheets in PDB entry 6BJB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 19first strand
Strand 2
A
250 260anti-parallel
Strand 3
A
112 120anti-parallel
Strand 4
A
53 57parallel
Strand 5
A
83 88parallel
Strand 6
B
83 88anti-parallel
Strand 7
B
53 57parallel
Strand 8
B
112 120parallel
Strand 9
B
250 260anti-parallel
Strand 10
B
18 19anti-parallel
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There are 18 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
312 315first strand
Strand 2
A
370 377parallel
Strand 3
A
381 389anti-parallel
Strand 4
A
273 282anti-parallel
Strand 5
A
7 14anti-parallel
Strand 6
A
250 260anti-parallel
Strand 7
A
112 120anti-parallel
Strand 8
A
53 57parallel
Strand 9
A
83 88parallel
Strand 10
B
83 88anti-parallel
Strand 11
B
53 57parallel
Strand 12
B
112 120parallel
Strand 13
B
250 260anti-parallel
Strand 14
B
7 14anti-parallel
Strand 15
B
273 282anti-parallel
Strand 16
B
381 389anti-parallel
Strand 17
B
370 377anti-parallel
Strand 18
B
312 315parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 142first strand
Strand 2
A
126 128anti-parallel
Strand 3
B
126 128anti-parallel
Strand 4
B
141 142anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
203 204first strand
Strand 2
A
213 214anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
150 151first strand
Strand 2
B
156 157anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
203 204first strand
Strand 2
B
213 214anti-parallel
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