Analysis of interatomic Contacts of Structural Units in PDB entry:
6BJE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6BJE entry

There are 2 chains in PDB entry 6BJE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 10VAL 231
B
 LEU 10VAL 231
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 14 helices in PDB entry 6BJE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
37 45Right-handed alpha
Helix 2
AA2
A
88 109Right-handed alpha
Helix 3
AA3
A
112 114Right-handed 310
Helix 4
AA4
A
122 135Right-handed alpha
Helix 5
AA5
A
180 195Right-handed alpha
Helix 6
AA6
A
196 198Right-handed 310
Helix 7
AA7
A
213 228Right-handed alpha
Helix 8
AA8
B
37 45Right-handed alpha
Helix 9
AA9
B
88 109Right-handed alpha
Helix 10
AB1
B
112 114Right-handed 310
Helix 11
AB2
B
122 133Right-handed alpha
Helix 12
AB3
B
180 195Right-handed alpha
Helix 13
AB4
B
196 198Right-handed 310
Helix 14
AB5
B
213 228Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 6BJE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 55first strand
Strand 2
A
25 30parallel
Strand 3
A
116 121parallel
Strand 4
A
141 145parallel
Strand 5
A
167 173parallel
Strand 6
A
200 205parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 63first strand
Strand 2
A
71 73anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
14 17first strand
Strand 2
B
52 57anti-parallel
Strand 3
B
25 30parallel
Strand 4
B
116 121parallel
Strand 5
B
141 145parallel
Strand 6
B
167 173parallel
Strand 7
B
200 205parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 63first strand
Strand 2
B
71 73anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il