Analysis of interatomic Contacts of Structural Units in PDB entry:
6BJP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6BJP entry

There are 5 chains in PDB entry 6BJP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	VAL 285
A	THR 287	PHE 490
B	ALA 2	VAL 285
B	THR 287	PHE 490
C	ALA 2	GLU 387

There are 72 helices in PDB entry 6BJP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	42	63	Right-handed alpha
Helix 2	AA2	A	64	82	Right-handed alpha
Helix 3	AA3	A	82	95	Right-handed alpha
Helix 4	AA4	A	97	102	Right-handed alpha
Helix 5	AA5	A	104	120	Right-handed alpha
Helix 6	AA6	A	121	123	Right-handed 310
Helix 7	AA7	A	154	169	Right-handed alpha
Helix 8	AA8	A	182	196	Right-handed alpha
Helix 9	AA9	A	210	219	Right-handed alpha
Helix 10	AB1	A	266	280	Right-handed alpha
Helix 11	AB2	A	281	284	Right-handed 310
Helix 12	AB3	A	298	312	Right-handed alpha
Helix 13	AB4	A	330	347	Right-handed alpha
Helix 14	AB5	A	360	366	Right-handed 310
Helix 15	AB6	A	381	386	Right-handed alpha
Helix 16	AB7	A	400	410	Right-handed alpha
Helix 17	AB8	A	423	434	Right-handed alpha
Helix 18	AB9	A	462	472	Right-handed alpha
Helix 19	AC1	B	42	63	Right-handed alpha
Helix 20	AC2	B	64	82	Right-handed alpha
Helix 21	AC3	B	82	95	Right-handed alpha
Helix 22	AC4	B	97	102	Right-handed alpha
Helix 23	AC5	B	104	120	Right-handed alpha
Helix 24	AC6	B	121	123	Right-handed 310
Helix 25	AC7	B	154	169	Right-handed alpha
Helix 26	AC8	B	182	196	Right-handed alpha
Helix 27	AC9	B	210	219	Right-handed alpha
Helix 28	AD1	B	266	280	Right-handed alpha
Helix 29	AD2	B	281	284	Right-handed 310
Helix 30	AD3	B	298	312	Right-handed alpha
Helix 31	AD4	B	330	347	Right-handed alpha
Helix 32	AD5	B	360	366	Right-handed 310
Helix 33	AD6	B	381	386	Right-handed alpha
Helix 34	AD7	B	400	410	Right-handed alpha
Helix 35	AD8	B	423	434	Right-handed alpha
Helix 36	AD9	B	462	472	Right-handed alpha
Helix 37	AE1	C	42	63	Right-handed alpha
Helix 38	AE2	C	64	82	Right-handed alpha
Helix 39	AE3	C	82	95	Right-handed alpha
Helix 40	AE4	C	97	104	Right-handed alpha
Helix 41	AE5	C	104	120	Right-handed alpha
Helix 42	AE6	C	121	123	Right-handed 310
Helix 43	AE7	C	154	169	Right-handed alpha
Helix 44	AE8	C	182	196	Right-handed alpha
Helix 45	AE9	C	210	219	Right-handed alpha
Helix 46	AF1	C	266	280	Right-handed alpha
Helix 47	AF2	C	281	284	Right-handed 310
Helix 48	AF3	C	298	312	Right-handed alpha
Helix 49	AF4	C	330	347	Right-handed alpha
Helix 50	AF5	C	360	366	Right-handed 310
Helix 51	AF6	C	381	386	Right-handed alpha
Helix 52	AF7	C	400	410	Right-handed alpha
Helix 53	AF8	C	423	434	Right-handed alpha
Helix 54	AF9	C	462	472	Right-handed alpha
Helix 55	AG1	D	42	63	Right-handed alpha
Helix 56	AG2	D	64	82	Right-handed alpha
Helix 57	AG3	D	82	95	Right-handed alpha
Helix 58	AG4	D	97	102	Right-handed alpha
Helix 59	AG5	D	104	120	Right-handed alpha
Helix 60	AG6	D	121	123	Right-handed 310
Helix 61	AG7	D	154	169	Right-handed alpha
Helix 62	AG8	D	182	196	Right-handed alpha
Helix 63	AG9	D	210	219	Right-handed alpha
Helix 64	AH1	D	266	280	Right-handed alpha
Helix 65	AH2	D	281	284	Right-handed 310
Helix 66	AH3	D	298	312	Right-handed alpha
Helix 67	AH4	D	330	347	Right-handed alpha
Helix 68	AH5	D	360	366	Right-handed 310
Helix 69	AH6	D	381	386	Right-handed alpha
Helix 70	AH7	D	400	410	Right-handed alpha
Helix 71	AH8	D	423	434	Right-handed alpha
Helix 72	AH9	D	462	472	Right-handed alpha

There are 16 sheets in PDB entry 6BJP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	10	first strand
Strand 2	A	15	16	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	27	first strand
Strand 2	A	34	39	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	127	131	first strand
Strand 2	A	134	142	anti-parallel
Strand 3	A	474	482	anti-parallel
Strand 4	D	438	441	parallel
Strand 5	D	416	420	parallel
Strand 6	D	258	261	parallel
Strand 7	D	291	295	parallel
Strand 8	D	392	398	parallel
Strand 9	D	372	375	parallel
Strand 10	D	350	353	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	149	first strand
Strand 2	A	172	176	parallel
Strand 3	A	202	204	parallel

Back to list of sheets
Back to top of page

There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	350	353	first strand
Strand 2	A	372	375	anti-parallel
Strand 3	A	392	398	parallel
Strand 4	A	291	295	parallel
Strand 5	A	258	261	parallel
Strand 6	A	416	420	parallel
Strand 7	A	438	441	parallel
Strand 8	D	474	482	parallel
Strand 9	D	134	142	anti-parallel
Strand 10	D	127	131	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	10	first strand
Strand 2	B	15	16	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	23	27	first strand
Strand 2	B	34	39	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	131	first strand
Strand 2	B	134	142	anti-parallel
Strand 3	B	474	482	anti-parallel
Strand 4	C	438	441	parallel
Strand 5	C	416	420	parallel
Strand 6	C	258	261	parallel
Strand 7	C	291	295	parallel
Strand 8	C	392	398	parallel
Strand 9	C	372	375	parallel
Strand 10	C	350	353	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	202	204	first strand
Strand 2	B	172	176	parallel
Strand 3	B	145	149	parallel
Strand 4	B	222	226	parallel

Back to list of sheets
Back to top of page

There are 10 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	350	353	first strand
Strand 2	B	372	375	anti-parallel
Strand 3	B	392	398	parallel
Strand 4	B	291	295	parallel
Strand 5	B	258	261	parallel
Strand 6	B	416	420	parallel
Strand 7	B	438	441	parallel
Strand 8	C	474	482	parallel
Strand 9	C	134	142	anti-parallel
Strand 10	C	127	131	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	11	first strand
Strand 2	C	14	16	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	23	27	first strand
Strand 2	C	34	39	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	202	204	first strand
Strand 2	C	172	176	parallel
Strand 3	C	145	149	parallel
Strand 4	C	222	226	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	10	first strand
Strand 2	D	15	16	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	23	27	first strand
Strand 2	D	34	39	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	202	204	first strand
Strand 2	D	172	176	parallel
Strand 3	D	145	149	parallel
Strand 4	D	222	224	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6BJP

Analysis of interatomic Contacts of Structural Units in PDB entry:
6BJP