Analysis of interatomic Contacts of Structural Units in PDB entry:
6BJR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6BJR entry

There are 8 chains in PDB entry 6BJR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1LEU 5
A
 VAL 8LEU 13
A
 ARG 15ARG 15
A
 CYS 17VAL 18
A
 THR 21TYR 24
A
 ALA 27PHE 28
A
 ALA 30LEU 31
A
 SER 33GLU 582
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 6BJR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 9Right-handed alpha
Helix 2
AA2
A
9 16Right-handed alpha
Helix 3
AA3
A
23 31Right-handed alpha
Helix 4
AA4
A
36 47Right-handed alpha
Helix 5
AA5
A
53 63Right-handed alpha
Helix 6
AA6
A
171 176Right-handed 310
Helix 7
AA7
A
315 319Right-handed 310
Helix 8
AA8
A
361 365Right-handed 310
Helix 9
AA9
A
367 371Right-handed 310
Helix 10
AB1
A
375 377Right-handed 310
Helix 11
AB2
A
442 451Right-handed alpha
Helix 12
AB3
A
462 468Right-handed alpha
Helix 13
AB4
A
489 494Right-handed alpha
Helix 14
AB5
A
495 497Right-handed 310
Helix 15
AB6
A
548 553Right-handed alpha
Helix 16
AB7
A
568 578Right-handed alpha
Helix 17
AB8
A
579 581Right-handed 310
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There are 6 sheets in PDB entry 6BJR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 127first strand
Strand 2
A
135 137anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
230 232first strand
Strand 2
A
240 242anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
325 326first strand
Strand 2
A
481 485anti-parallel
Strand 3
A
456 460anti-parallel
Strand 4
A
527 530anti-parallel
Strand 5
A
543 545anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
339 340first strand
Strand 2
A
379 380anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
351 352first strand
Strand 2
A
357 359anti-parallel
Strand 3
A
421 424anti-parallel
Strand 4
A
405 406anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
505 507first strand
Strand 2
A
559 561anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il