Analysis of interatomic Contacts of Structural Units in PDB entry:
6BJS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6BJS entry

There are 8 chains in PDB entry 6BJS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	C 2	G 32
B	C 1	G 31
R	C 19	U 29
G	PHE 8	GLU 235
H	VAL 5	GLU 235
I	VAL 2	ASP 1341
J	GLU 16	ARG 1373
K	ALA 2	LEU 80

There are104 helices in PDB entry 6BJS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	G	34	48	Right-handed alpha
Helix 2	AA2	G	77	87	Right-handed alpha
Helix 3	AA3	G	111	115	Right-handed 310
Helix 4	AA4	G	154	158	Right-handed 310
Helix 5	AA5	G	212	230	Right-handed alpha
Helix 6	AA6	H	34	50	Right-handed alpha
Helix 7	AA7	H	77	87	Right-handed alpha
Helix 8	AA8	H	113	115	Right-handed 310
Helix 9	AA9	H	212	228	Right-handed alpha
Helix 10	AB1	H	229	232	Right-handed 310
Helix 11	AB2	I	28	39	Right-handed alpha
Helix 12	AB3	I	48	57	Right-handed alpha
Helix 13	AB4	I	82	89	Right-handed alpha
Helix 14	AB5	I	206	213	Right-handed alpha
Helix 15	AB6	I	216	225	Right-handed alpha
Helix 16	AB7	I	270	281	Right-handed alpha
Helix 17	AB8	I	290	294	Right-handed 310
Helix 18	AB9	I	318	329	Right-handed alpha
Helix 19	AC1	I	346	354	Right-handed alpha
Helix 20	AC2	I	358	371	Right-handed alpha
Helix 21	AC3	I	377	390	Right-handed alpha
Helix 22	AC4	I	398	410	Right-handed alpha
Helix 23	AC5	I	421	438	Right-handed alpha
Helix 24	AC6	I	447	449	Right-handed 310
Helix 25	AC7	I	455	481	Right-handed alpha
Helix 26	AC8	I	494	508	Right-handed alpha
Helix 27	AC9	I	519	528	Right-handed alpha
Helix 28	AD1	I	539	543	Right-handed 310
Helix 29	AD2	I	551	555	Right-handed 310
Helix 30	AD3	I	608	612	Right-handed 310
Helix 31	AD4	I	662	667	Right-handed alpha
Helix 32	AD5	I	670	674	Right-handed 310
Helix 33	AD6	I	675	688	Right-handed alpha
Helix 34	AD7	I	704	712	Right-handed alpha
Helix 35	AD8	I	819	826	Right-handed alpha
Helix 36	AD9	I	858	864	Right-handed alpha
Helix 37	AE1	I	942	979	Right-handed alpha
Helix 38	AE2	I	986	991	Right-handed alpha
Helix 39	AE3	I	994	998	Right-handed 310
Helix 40	AE4	I	1005	1038	Right-handed alpha
Helix 41	AE5	I	1081	1085	Right-handed 310
Helix 42	AE6	I	1109	1134	Right-handed alpha
Helix 43	AE7	I	1137	1151	Right-handed alpha
Helix 44	AE8	I	1167	1177	Right-handed alpha
Helix 45	AE9	I	1191	1202	Right-handed alpha
Helix 46	AF1	I	1238	1242	Right-handed 310
Helix 47	AF2	I	1272	1280	Right-handed alpha
Helix 48	AF3	I	1283	1292	Right-handed alpha
Helix 49	AF4	I	1297	1311	Right-handed alpha
Helix 50	AF5	I	1320	1333	Right-handed alpha
Helix 51	AF6	J	26	34	Right-handed alpha
Helix 52	AF7	J	58	63	Right-handed alpha
Helix 53	AF8	J	77	81	Right-handed 310
Helix 54	AF9	J	96	101	Right-handed alpha
Helix 55	AG1	J	113	118	Right-handed alpha
Helix 56	AG2	J	122	128	Right-handed alpha
Helix 57	AG3	J	131	140	Right-handed alpha
Helix 58	AG4	J	162	172	Right-handed alpha
Helix 59	AG5	J	180	192	Right-handed alpha
Helix 60	AG6	J	194	208	Right-handed alpha
Helix 61	AG7	J	210	230	Right-handed alpha
Helix 62	AG8	J	233	238	Right-handed 310
Helix 63	AG9	J	246	250	Right-handed 310
Helix 64	AH1	J	263	285	Right-handed alpha
Helix 65	AH2	J	288	309	Right-handed alpha
Helix 66	AH3	J	326	332	Right-handed alpha
Helix 67	AH4	J	336	341	Right-handed alpha
Helix 68	AH5	J	370	377	Right-handed alpha
Helix 69	AH6	J	377	388	Right-handed alpha
Helix 70	AH7	J	393	404	Right-handed alpha
Helix 71	AH8	J	407	416	Right-handed alpha
Helix 72	AH9	J	430	434	Right-handed 310
Helix 73	AI1	J	450	452	Right-handed 310
Helix 74	AI2	J	453	458	Right-handed alpha
Helix 75	AI3	J	473	483	Right-handed alpha
Helix 76	AI4	J	504	514	Right-handed alpha
Helix 77	AI5	J	529	540	Right-handed alpha
Helix 78	AI6	J	574	583	Right-handed alpha
Helix 79	AI7	J	597	613	Right-handed alpha
Helix 80	AI8	J	614	636	Right-handed alpha
Helix 81	AI9	J	648	670	Right-handed alpha
Helix 82	AJ1	J	674	703	Right-handed alpha
Helix 83	AJ2	J	720	728	Right-handed alpha
Helix 84	AJ3	J	733	741	Right-handed alpha
Helix 85	AJ4	J	768	804	Right-handed alpha
Helix 86	AJ5	J	834	840	Right-handed alpha
Helix 87	AJ6	J	865	876	Right-handed alpha
Helix 88	AJ7	J	914	925	Right-handed alpha
Helix 89	AJ8	J	926	930	Right-handed 310
Helix 90	AJ9	J	1068	1072	Right-handed 310
Helix 91	AK1	J	1137	1147	Right-handed alpha
Helix 92	AK2	J	1216	1225	Right-handed alpha
Helix 93	AK3	J	1226	1245	Right-handed alpha
Helix 94	AK4	J	1250	1261	Right-handed alpha
Helix 95	AK5	J	1282	1295	Right-handed alpha
Helix 96	AK6	J	1310	1315	Right-handed alpha
Helix 97	AK7	J	1318	1325	Right-handed alpha
Helix 98	AK8	J	1327	1339	Right-handed alpha
Helix 99	AK9	J	1347	1354	Right-handed alpha
Helix 100	AL1	J	1360	1372	Right-handed alpha
Helix 101	AL2	K	6	13	Right-handed alpha
Helix 102	AL3	K	17	32	Right-handed alpha
Helix 103	AL4	K	45	56	Right-handed alpha
Helix 104	AL5	K	60	78	Right-handed alpha

There are 46 sheets in PDB entry 6BJS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	12	17	first strand
Strand 2	G	25	31	anti-parallel
Strand 3	G	199	207	anti-parallel
Strand 4	G	180	189	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	52	53	first strand
Strand 2	G	149	153	anti-parallel
Strand 3	G	175	177	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	97	105	first strand
Strand 2	G	139	147	anti-parallel
Strand 3	G	56	60	anti-parallel
Strand 4	G	171	172	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	90	91	first strand
Strand 2	G	122	123	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	108	109	first strand
Strand 2	G	132	133	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	12	18	first strand
Strand 2	H	23	31	anti-parallel
Strand 3	H	198	207	anti-parallel
Strand 4	H	180	190	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	97	100	first strand
Strand 2	H	142	150	anti-parallel
Strand 3	H	52	61	anti-parallel
Strand 4	H	171	172	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	90	91	first strand
Strand 2	H	122	123	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	104	105	first strand
Strand 2	H	139	140	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	108	111	first strand
Strand 2	H	129	133	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	152	153	first strand
Strand 2	H	175	176	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	59	60	first strand
Strand 2	I	67	75	anti-parallel
Strand 3	I	93	104	anti-parallel
Strand 4	I	116	128	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	136	137	first strand
Strand 2	I	142	143	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	451	453	first strand
Strand 2	I	147	151	anti-parallel
Strand 3	I	530	531	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	154	158	first strand
Strand 2	I	173	177	anti-parallel
Strand 3	I	184	187	anti-parallel
Strand 4	I	195	197	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	227	230	first strand
Strand 2	I	333	336	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	255	257	first strand
Strand 2	I	260	263	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	296	297	first strand
Strand 2	I	315	316	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	301	302	first strand
Strand 2	I	309	311	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	592	593	first strand
Strand 2	I	652	653	anti-parallel
Strand 3	I	616	617	parallel
Strand 4	I	633	637	anti-parallel
Strand 5	I	642	646	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	700	701	first strand
Strand 2	I	1182	1183	parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	722	727	first strand
Strand 2	I	731	736	anti-parallel
Strand 3	I	749	752	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	757	758	first strand
Strand 2	I	764	765	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	768	769	first strand
Strand 2	I	784	785	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	815	818	first strand
Strand 2	I	1074	1079	parallel
Strand 3	I	1065	1067	anti-parallel
Strand 4	I	1225	1234	anti-parallel
Strand 5	I	798	804	anti-parallel
Strand 6	I	1096	1098	parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	815	818	first strand
Strand 2	I	1074	1079	parallel
Strand 3	I	1065	1067	anti-parallel
Strand 4	I	1225	1234	anti-parallel
Strand 5	I	1209	1210	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	830	832	first strand
Strand 2	I	1056	1058	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	835	841	first strand
Strand 2	I	1046	1054	anti-parallel
Strand 3	I	926	935	anti-parallel
Strand 4	I	876	877	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	882	884	first strand
Strand 2	I	918	919	anti-parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	1244	1246	first strand
Strand 2	J	350	356	anti-parallel
Strand 3	J	465	469	anti-parallel
Strand 4	J	421	424	anti-parallel
Strand 5	J	436	442	anti-parallel
Strand 6	J	365	369	parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	1244	1246	first strand
Strand 2	J	350	356	anti-parallel
Strand 3	J	447	448	parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	1268	1270	first strand
Strand 2	J	345	347	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	1336	1339	first strand
Strand 2	J	20	23	anti-parallel
Strand 3	J	1341	1342	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	104	106	first strand
Strand 2	J	241	243	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	159	161	first strand
Strand 2	J	143	147	anti-parallel
Strand 3	J	177	179	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	253	254	first strand
Strand 2	J	260	261	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	525	526	first strand
Strand 2	J	548	556	parallel
Strand 3	J	564	572	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	706	707	first strand
Strand 2	J	714	715	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	819	822	first strand
Strand 2	J	880	883	anti-parallel

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There are 5 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	949	951	first strand
Strand 2	J	1016	1019	anti-parallel
Strand 3	J	1001	1003	anti-parallel
Strand 4	J	973	975	anti-parallel
Strand 5	J	965	967	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	957	959	first strand
Strand 2	J	981	985	anti-parallel
Strand 3	J	991	996	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	1025	1028	first strand
Strand 2	J	1120	1124	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	1034	1035	first strand
Strand 2	J	1080	1081	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	1059	1061	first strand
Strand 2	J	1105	1107	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	1187	1190	first strand
Strand 2	J	1173	1178	anti-parallel
Strand 3	J	1161	1165	anti-parallel
Strand 4	J	1203	1204	anti-parallel

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There are 3 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	1279	1281	first strand
Strand 2	J	1263	1268	anti-parallel
Strand 3	J	1301	1304	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6BJS

Analysis of interatomic Contacts of Structural Units in PDB entry:
6BJS